View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13310_low_3 (Length: 641)
Name: NF13310_low_3
Description: NF13310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13310_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 5 - 624
Target Start/End: Original strand, 30541740 - 30542360
Alignment:
| Q |
5 |
aagtacacaaaaaaccaatcatgtgctttatcttagtaaagttaatttcttttgttttataattctctgaggaatcagaatgaagtgcaataagtgaagc |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30541740 |
aagtacacaaaaaaccaatcatgtgctttatcttagtaaagttaatttcttttgttttataatcctctgaggaatcagaatgaagtgcaataagtgaagc |
30541839 |
T |
|
| Q |
105 |
tgataaggttaagagaaacacagtgtttagtgtnnnnnnngtgagtttttgagaattgataaaaaa-tgaaaataaagcattgaaagcaagttgtgatgc |
203 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30541840 |
tgataaggttaagagaaacacagtgttcagtgtaaaaaaagtgagtttttgagaattgataaaaaaatgaaaataaagcattgaaagcaagttgtgatgc |
30541939 |
T |
|
| Q |
204 |
acaaataagtgaataggttgaaacaggaagatataaaagtcctattgagtacatgaaataatcacaagctaatagaatacctaaagagaagtaaattatg |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30541940 |
acaaataagtgaataggttgaaacaggaagatataaaagtcctattgagtacatgaaataatcacaagctaatagaatacctaaagagaagtaaattatg |
30542039 |
T |
|
| Q |
304 |
ataagagtgtgaatagaagagtgcatagtggtttcaaaagtgttttttgcttgaggaaatnnnnnnngtggtatgaaaagaattggaaaagcaatagttt |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30542040 |
ataagagtgtgaatagaagagtgcatagtggtttcaaaagtgttttttgcttgaggaaataaaaaaagtggtatgaaaagaattggaaaagcaatagttt |
30542139 |
T |
|
| Q |
404 |
gtaatagtgtgttcatccataaactttttccaccttggtcaaagtagaatattccaagcataactgcacttgattgacccatcaagaataagaaagtgtt |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30542140 |
gtaatagtgtgttcatccataaactttttccaccttggtcaaagtagaatcttccaagcataactgcacttgattgacccatcaaggataagaaagtgtt |
30542239 |
T |
|
| Q |
504 |
gagtattactgcaaaccaccatttccaatggctaagatagaaaacaaattgttcatcttgtgttgttggatggtagtgtgaggatgtttcattttcagta |
603 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30542240 |
gagtattactgcaaaccaccatttccaatggctaagatagaaaacaaattgctcatcttgtgttgttggatggtagtgtgaggatgtttcattttcagta |
30542339 |
T |
|
| Q |
604 |
tcagccatttaaatttgtata |
624 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
30542340 |
tcagccatttaaatttgtata |
30542360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University