View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13310_low_4 (Length: 593)
Name: NF13310_low_4
Description: NF13310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13310_low_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 16 - 593
Target Start/End: Original strand, 2063727 - 2064301
Alignment:
| Q |
16 |
atcatcgagtatgatagaatctagattgaagtagagatttttagtnnnnnnncataatcataaccatggtgtattataattggcaagaaagaatacaaac |
115 |
Q |
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| T |
2063727 |
atcatcgagtatgatagaatctagtttgaagtagagatttctagtaa------aaaaacataatcatggtgtattataattggcaagaaagaatacaaac |
2063820 |
T |
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| Q |
116 |
tacta---aaaacaaccc-ataatatttttgtatagagaaagnnnnnnnnttatccataattggtgcgcctttttacaagatccaatattataattcctt |
211 |
Q |
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| T |
2063821 |
tactactaaaaacaaccccataatatttttgtatagagagaaaaaaaaaattatccataattggtgcgtctttttacaagatccaatattataattcctt |
2063920 |
T |
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| Q |
212 |
gtatcatttcatctaatttaacattcctaaaaatattcatgatctaaatcccaaaatcaccatacctctactcatttgcattaattttgttctaaagcct |
311 |
Q |
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| T |
2063921 |
gtatcttttcatctaatt-aacattcctaaaaatattcatgatctaaatcccaaaatcaccatacctctactcatttgcattaattttgttctaaagcct |
2064019 |
T |
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| Q |
312 |
caaaggaaaatcaaaagtgaagccaaataacatagtagcaaatgtttacaaagattnnnnnnnnnnnnnttatatcgaaatttataaacctaaatgttaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2064020 |
caaaggaaaatcaaaagtgaagccaaataacatagtagcaaatgtttacaaagattaaaaataaaaaaattatatcgaaatttataaacctaaatgttaa |
2064119 |
T |
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| Q |
412 |
tgtactttaccaatcatacccctgaaagccaccgaaacatttcactaatttcttcaccaattctgttaccttcaacgtcataatcaaccggttcaattct |
511 |
Q |
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| T |
2064120 |
tgtactttaccaatcatacccctgaaagccaccgaaacatttcactaatctcttcaccaattctgttaccttcaacgtcataatcaaccggttcaattct |
2064219 |
T |
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| Q |
512 |
gcgactacttccacctccggcgaagaatcttccagaactccgaaacgacgccgttcgcgatgaaatcgaagccgatagtctg |
593 |
Q |
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| T |
2064220 |
gcgactacttccacctccggcgaagaatcttccagaactccgaaacgacgccgttcgcgatgaaatcgaagccgatagtctg |
2064301 |
T |
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