View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13310_low_5 (Length: 569)
Name: NF13310_low_5
Description: NF13310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13310_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 246 - 558
Target Start/End: Complemental strand, 6120127 - 6119813
Alignment:
| Q |
246 |
tactgctggatatttct---ttaagtttcttggagcactaatctcttggtgttaaaagaatcaacatatggtggcattatcatcatgcgagactgagtac |
342 |
Q |
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| T |
6120127 |
tactgctggatatttctaatttaagtttcttggagcactaatctcttggtgttaaaagaatcaacatatggtggcattatcatcatgcgagactgagtac |
6120028 |
T |
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| Q |
343 |
atagcaggatcatatgctgcctgtcaagcaatttggtttggatttgtgcttaaggagctaatggttgaagtgaagaaatcaatcaaacttctaattggta |
442 |
Q |
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| T |
6120027 |
atagcaggatcatatgctgcctgtcaagcaatttggtttggatttgtgcttaaggagctaatggttgaagtgaagaaatcaatcaaacttctaattgata |
6119928 |
T |
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| Q |
443 |
acaagtcagcaataaatctagcgaagaacccattgttaaatggcagaagcaaacacataggggtaatattttatttcctaagagagaaggtgaacaatgg |
542 |
Q |
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| T |
6119927 |
acaagtcagcaataaatctagcgaagaacccattgttacatggcagaagcaaacacataggggt-atattttatttcctaagagagaaggtgaacaatgg |
6119829 |
T |
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| Q |
543 |
aaggcttaaagtgatg |
558 |
Q |
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| T |
6119828 |
aaggcttaaagtgatg |
6119813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 6120372 - 6120165
Alignment:
| Q |
17 |
attttgcaatgggattaataagtaggtttatggatgatcttagaagatctcgaatgaatgtagcaa--taagagaagacagatgcattgctagatcgtta |
114 |
Q |
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| T |
6120372 |
attttgcaatgggattaataagtaggtttatggatgatcttagaagatctcgaatgaatgtagcaaaataagagaagacagatgcattgctagatcgtta |
6120273 |
T |
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| Q |
115 |
taagcacgttgaataattaatggaagtatgcaacattgaggtatggaattatatttccaaaagttgcagaatagacagatgcattgctaatttgtttttt |
214 |
Q |
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| T |
6120272 |
taagcacgttgaataattaatggaagtatgcaacattgaggtatggaattatatttccaaaagttgcagaatagacggatgcattgctaatttgtttttt |
6120173 |
T |
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| Q |
215 |
ctgatgct |
222 |
Q |
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|||||||| |
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| T |
6120172 |
ctgatgct |
6120165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 386 - 500
Target Start/End: Original strand, 6172543 - 6172652
Alignment:
| Q |
386 |
ttgtgcttaaggagctaatggttgaagtgaagaaatcaatcaaacttctaattggtaacaagtcagcaataaatctagcgaagaacccattgttaaatgg |
485 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6172543 |
ttgtgcttaaggagctaatggttgaagtga-----tcaatcaaactgctaattgataacaagtcagcaataaatctagcgaagaacccattgttacatgg |
6172637 |
T |
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| Q |
486 |
cagaagcaaacacat |
500 |
Q |
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| T |
6172638 |
cagaagcaaacacat |
6172652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 132
Target Start/End: Original strand, 6120764 - 6120794
Alignment:
| Q |
102 |
tgctagatcgttataagcacgttgaataatt |
132 |
Q |
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| T |
6120764 |
tgctagatcgttataagcacgttgaataatt |
6120794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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