View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13310_low_7 (Length: 546)
Name: NF13310_low_7
Description: NF13310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13310_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 51269166 - 51268889
Alignment:
| Q |
19 |
atagatacaatataaaattatccatgtatctttatttaaaacttaaactttgacaataatttattcgttatatgatactataaatctttataatggagta |
118 |
Q |
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| T |
51269166 |
atagatacaatataaaattatcc-tgtatctttatttaaaacttaaactttgacaataatttattcgttatatgatactataaatctttataatggagta |
51269068 |
T |
|
| Q |
119 |
gtggtttagagttcaatgattaccgtcctctttcttttaagaaatgttagatttcagaacaaaataaacgatgttctttttctttttaacgtatagtttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51269067 |
gtggtttagagttcaatgattaccgtcctctttcttttaagaaatgttagatttcagaacaaaataaacgatgttctttttctttttaacgtatagtttt |
51268968 |
T |
|
| Q |
219 |
catgttgaaattaataatgtattttttcggcaataaaaatataaaatggcattatttgataaaaactatgagtgttacg |
297 |
Q |
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| T |
51268967 |
catgttgaaattaataatgtattttttcggcaataaaaatataaaatggcattatttgataaaaactatgagtgttacg |
51268889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 322 - 535
Target Start/End: Complemental strand, 51268872 - 51268659
Alignment:
| Q |
322 |
cactcaccagccagagtggaatatgtccttgaacaagcagttctccttcccatctctcttgagggatactagtccatgcaacatggtgttggtggtcgcc |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51268872 |
cactcaccagccagagtggaatatgtccttgaacaagcagttctccttcccatctctcttgagggatactagtccatgcaacatggtgttggtggtcgcc |
51268773 |
T |
|
| Q |
422 |
ggtggtctctgaacgtttctccggtggtggaggtggagcaatcacacgcgatggactaacaacatttgtgacggtcaaatgatctcgaagatcatgttgg |
521 |
Q |
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| T |
51268772 |
ggtggtctctgaacgtttctccggtggtggaggtggagcaatcacacgcgatggactaacaacatttgtgacggtcaaatgatctcgaagattatgttgg |
51268673 |
T |
|
| Q |
522 |
cctttatagatgcc |
535 |
Q |
| |
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|||||||||||||| |
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| T |
51268672 |
cctttatagatgcc |
51268659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 170; Significance: 6e-91; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 322 - 535
Target Start/End: Complemental strand, 23306914 - 23306701
Alignment:
| Q |
322 |
cactcaccagccagagtggaatatgtccttgaacaagcagttctccttcccatctctcttgagggatactagtccatgcaacatggtgttggtggtcgcc |
421 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
23306914 |
cactcaccagccagagtggaatatgtccttgaacaagcagttctccttcccatctctcttgatggatactagtccatgcaacatggtgttggtggtcacc |
23306815 |
T |
|
| Q |
422 |
ggtggtctctgaacgtttctccggtggtggaggtggagcaatcacacgcgatggactaacaacatttgtgacggtcaaatgatctcgaagatcatgttgg |
521 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| ||| |||||| |||||||||||||||| |||||| | ||||| |
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| T |
23306814 |
ggtggtctctgaacgtttctccggtggttgaggtggaacaatcacacacgatggactcacagcatttgcgacggtcaaatgatcttgaagattacgttgg |
23306715 |
T |
|
| Q |
522 |
cctttatagatgcc |
535 |
Q |
| |
|
|||||||||||||| |
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|
| T |
23306714 |
cctttatagatgcc |
23306701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 27 - 219
Target Start/End: Complemental strand, 23307188 - 23306990
Alignment:
| Q |
27 |
aatataaaattatccatgtatctttatttaaaacttaaactttgacaataatttattcgttatatgatactata------aatctttataatggagtagt |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||| ||| ||||||| |||||||| ||| |
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| T |
23307188 |
aatataaaattatccatgtatctttatttaaaacttacgctttgacaatattttattcattatatgatatgatattataaaatctttttaatggagcagt |
23307089 |
T |
|
| Q |
121 |
ggtttagagttcaatgattaccgtcctctttcttttaagaaatgttagatttcagaacaaaataaacgatgttctttttctttttaacgtatagttttc |
219 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||| ||||||||| | |||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
23307088 |
ggtttagagttcaattattacggtcctctttcttttaagaagtgttagattacggaaccaaataaacgatgttctttttctttttaatttatagttttc |
23306990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 23306994 - 23306948
Alignment:
| Q |
242 |
ttttcggcaataaaaatataaaa-tggcattatttgataaaaactat |
287 |
Q |
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||||||||||||||||||||||| |||| ||||||||| |||||||| |
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| T |
23306994 |
ttttcggcaataaaaatataaaattggctttatttgattaaaactat |
23306948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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