View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13310_low_9 (Length: 544)

Name: NF13310_low_9
Description: NF13310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13310_low_9
NF13310_low_9
[»] chr6 (10 HSPs)
chr6 (338-544)||(28180634-28180845)
chr6 (338-544)||(28184886-28185097)
chr6 (1-127)||(28180285-28180407)
chr6 (1-73)||(28241977-28242047)
chr6 (460-544)||(28149338-28149423)
chr6 (238-289)||(28149140-28149191)
chr6 (82-127)||(28148927-28148972)
chr6 (244-289)||(28225146-28225191)
chr6 (381-449)||(28226556-28226623)
chr6 (506-544)||(28226642-28226680)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-118)||(58778-58892)
[»] scaffold0038 (4 HSPs)
scaffold0038 (1-73)||(42139-42209)
scaffold0038 (244-289)||(25644-25689)
scaffold0038 (381-449)||(27054-27121)
scaffold0038 (506-544)||(27140-27178)


Alignment Details
Target: chr6 (Bit Score: 116; Significance: 9e-59; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 338 - 544
Target Start/End: Original strand, 28180634 - 28180845
Alignment:
Q  338 aagtgaactaaccatttaagttgatatactgaaaatttatgttgaatttgtgtgttaaaataacacaactcgttaaaatcttaagttgaatcggtgaaac 437  Q
    ||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||     
T  28180634 aagtgaactaaccatttaaattgatatactgaaatttgatgttgaatttgtgtgttaaaatagcacaactcattaaaatcttaagttgaatcggtgaaat 28180733  T
Q  438 gttgaagttgattagcatctgcgttgatt-----tgtcttctcttttgaatttggtagaatggaaatagaaaggaagtttcactcactatggtctttggt 532  Q
    |||||||||| | ||  ||| ||||||||     |||||| ||||||| ||||||||||  |||||| | |||||||||| |||||| ||||||||||||    
T  28180734 gttgaagttgttaagtgtcttcgttgatttgtcctgtcttttcttttgtatttggtagataggaaatgggaaggaagtttaactcacgatggtctttggt 28180833  T
Q  533 caatggatcctc 544  Q
    ||||||||||||    
T  28180834 caatggatcctc 28180845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 338 - 544
Target Start/End: Original strand, 28184886 - 28185097
Alignment:
Q  338 aagtgaactaaccatttaagttgatatactgaaaatttatgttgaatttgtgtgttaaaataacacaactcgttaaaatcttaagttgaatcggtgaaac 437  Q
    ||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||     
T  28184886 aagtgaactaaccatttaaattgatatactgaaatttgatgttgaatttgtgtgttaaaatagcacaactcattaaaatcttaagttgaatcggtgaaat 28184985  T
Q  438 gttgaagttgattagcatctgcgttgatt-----tgtcttctcttttgaatttggtagaatggaaatagaaaggaagtttcactcactatggtctttggt 532  Q
    |||||||||| | ||  ||| ||||||||     |||||| ||||||| ||||||||||  |||||| | |||||||||| |||||| ||||||||||||    
T  28184986 gttgaagttgttaagtgtcttcgttgatttgtcctgtcttttcttttgtatttggtagataggaaatgggaaggaagtttaactcacgatggtctttggt 28185085  T
Q  533 caatggatcctc 544  Q
    ||||||||||||    
T  28185086 caatggatcctc 28185097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 28180285 - 28180407
Alignment:
Q  1 attgcacggttcttcatattttcaattttatagattatatgcttataaagatatttatcagtttcaaataatgtaaggtcatcaatgattgaaaattgat 100  Q
    |||||||||||||| |||||||||||||||||||||||   | ||||||  ||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  28180285 attgcacggttcttgatattttcaattttatagattatc--catataaa--tatttctcagtttcaaataatgtaaggtcttcaatgattgaaaattgat 28180380  T
Q  101 gataatggtaagagaacatcttaccca 127  Q
    ||||||| |||||||||||||||||||    
T  28180381 gataatgctaagagaacatcttaccca 28180407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 28241977 - 28242047
Alignment:
Q  1 attgcacggttcttcatattttcaattttatagattatatgcttataaagatatttatcagtttcaaataatg 73  Q
    |||||||||||||| |||||||||| ||||||| | ||||||||||||  |||||| ||||||||||||||||    
T  28241977 attgcacggttcttgatattttcaactttatagttaatatgcttataa--atatttctcagtttcaaataatg 28242047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 460 - 544
Target Start/End: Original strand, 28149338 - 28149423
Alignment:
Q  460 gttgatttgtcttctcttttgaatttggtagaat-ggaaatagaaaggaagtttcactcactatggtctttggtcaatggatcctc 544  Q
    ||||||||||||| ||||||| ||||||||  || |||||| | |||||||||| |||||| | |||||||||||| |||||||||    
T  28149338 gttgatttgtcttttcttttgtatttggtaagataggaaatgggaaggaagtttaactcacaacggtctttggtcagtggatcctc 28149423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 238 - 289
Target Start/End: Original strand, 28149140 - 28149191
Alignment:
Q  238 aagtaggagaataattaagacgaagaatttaaaagatatgcattaatatttt 289  Q
    |||||||||||||||||||  |||||||||||||||||||||  ||||||||    
T  28149140 aagtaggagaataattaagttgaagaatttaaaagatatgcaccaatatttt 28149191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 28148927 - 28148972
Alignment:
Q  82 tcaatgattgaaaattgatgataatggtaagagaacatcttaccca 127  Q
    |||||||||||||||||||||||||| || ||||||| ||||||||    
T  28148927 tcaatgattgaaaattgatgataatgctatgagaacagcttaccca 28148972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 28225146 - 28225191
Alignment:
Q  244 gagaataattaagacgaagaatttaaaagatatgcattaatatttt 289  Q
    ||||||||||||| |||||||||||| ||||||||||| |||||||    
T  28225146 gagaataattaagccgaagaatttaatagatatgcatttatatttt 28225191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 449
Target Start/End: Original strand, 28226556 - 28226623
Alignment:
Q  381 gaatttgtgtgttaaaataacacaactcgttaaaatcttaagttgaatcggtgaaacgttgaagttgat 449  Q
    |||||||||||||||||||| ||| ||  || ||||||| ||||||||  |||||||||||||||||||    
T  28226556 gaatttgtgtgttaaaataatacagcttatttaaatctttagttgaat-tgtgaaacgttgaagttgat 28226623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 544
Target Start/End: Original strand, 28226642 - 28226680
Alignment:
Q  506 gaagtttcactcactatggtctttggtcaatggatcctc 544  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  28226642 gaagtttcactcccaatggtctttggtcaatggatcctc 28226680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 58892 - 58778
Alignment:
Q  1 attgcacggttcttcatattttcaattttatagattatatgcttataaagatatttatcagtttcaaataatgtaaggtcatcaatgattgaaaattgat 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| | ||| |||||||||||||||||||    
T  58892 attgcacggttcttgatattttcaattttatagattatatgcttataa--atatttatcagtttcaaataatgt-acgtcttcaatgattgaaaattgat 58796  T
Q  101 gataatggtaagagaaca 118  Q
    ||||||| || |||||||    
T  58795 gataatgctatgagaaca 58778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 42139 - 42209
Alignment:
Q  1 attgcacggttcttcatattttcaattttatagattatatgcttataaagatatttatcagtttcaaataatg 73  Q
    |||||||||||||| |||||||||| ||||||| | ||||||||||||  |||||| ||||||||||||||||    
T  42139 attgcacggttcttgatattttcaactttatagttaatatgcttataa--atatttctcagtttcaaataatg 42209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 25644 - 25689
Alignment:
Q  244 gagaataattaagacgaagaatttaaaagatatgcattaatatttt 289  Q
    ||||||||||||| |||||||||||| ||||||||||| |||||||    
T  25644 gagaataattaagccgaagaatttaatagatatgcatttatatttt 25689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 449
Target Start/End: Original strand, 27054 - 27121
Alignment:
Q  381 gaatttgtgtgttaaaataacacaactcgttaaaatcttaagttgaatcggtgaaacgttgaagttgat 449  Q
    |||||||||||||||||||| ||| ||  || ||||||| ||||||||  |||||||||||||||||||    
T  27054 gaatttgtgtgttaaaataatacagcttatttaaatctttagttgaat-tgtgaaacgttgaagttgat 27121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 544
Target Start/End: Original strand, 27140 - 27178
Alignment:
Q  506 gaagtttcactcactatggtctttggtcaatggatcctc 544  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  27140 gaagtttcactcccaatggtctttggtcaatggatcctc 27178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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