View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13311_high_1 (Length: 763)

Name: NF13311_high_1
Description: NF13311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13311_high_1
NF13311_high_1
[»] chr2 (5 HSPs)
chr2 (422-745)||(8257841-8258165)
chr2 (13-286)||(8258558-8258834)
chr2 (319-410)||(8258223-8258313)
chr2 (287-327)||(8258496-8258536)
chr2 (65-151)||(13266789-13266875)
[»] chr7 (2 HSPs)
chr7 (65-169)||(32471261-32471366)
chr7 (289-340)||(29292189-29292240)
[»] chr8 (1 HSPs)
chr8 (287-344)||(11364481-11364538)
[»] chr6 (2 HSPs)
chr6 (69-168)||(6919337-6919437)
chr6 (293-340)||(13436839-13436886)
[»] chr4 (1 HSPs)
chr4 (293-341)||(23407668-23407716)
[»] chr5 (1 HSPs)
chr5 (293-340)||(42954804-42954851)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 422 - 745
Target Start/End: Complemental strand, 8258165 - 8257841
Alignment:
Q  422 ttcatcaatattcttgatttgaaaatcactagccacgcgttcatttacctcaactttcttgatttttaaaacactagc-atgtgtctatttaactcaacc 520  Q
    |||||||||||||||||||||||||||||||| || ||| |||||||| |||||||||||||||||||||||| |||| |  ||||||||||||||||||    
T  8258165 ttcatcaatattcttgatttgaaaatcactagtcatgcgctcatttacatcaactttcttgatttttaaaacaatagccacatgtctatttaactcaacc 8258066  T
Q  521 aattatattatgtcaaatatatttccaatatatgcaattttaaatcgtaatatctaacacataatcatcgttttcgcgggacattactattgttctgtca 620  Q
    || ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  8258065 aaatatattatgtcaaatgtatttccaatatatgcaattttaaatcgtaatatctaaaacataatcatcgttttcgcgggacattactattgttctatca 8257966  T
Q  621 acataaagcatagaaaagaaagnnnnnnnngaatacattaaaggggtcaaataccatgtctgaaaatgcatgtcagcccccaagagaggatcgtgattct 720  Q
    ||||||| ||||||||||||||        |||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |    
T  8257965 acataaaacatagaaaagaaagaaaaaaaagaatacattaaaggagtcaaataccatgtatgaaaatgtatgtcagcccccaagagaggatcgtgattat 8257866  T
Q  721 aaacacacccctttcttatattccc 745  Q
    |||| || |||||||||||||||||    
T  8257865 aaactcatccctttcttatattccc 8257841  T

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Target: chr2; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 13 - 286
Target Start/End: Complemental strand, 8258834 - 8258558
Alignment:
Q  13 aaaggcagaaaagaaagacttcgttaannnnnnncatacccatcatagtttatctatttatgcacaattcaagctttcttgattttaggattactagcaa 112  Q
    |||| ||||||||||||||||| || |       ||||||||||||||||||||||||||| || |||||||||||  ||||||||||||||||||||||    
T  8258834 aaagacagaaaagaaagacttcattcattttcttcatacccatcatagtttatctatttatccataattcaagcttcattgattttaggattactagcaa 8258735  T
Q  113 catcttcatttgtctcatcaataatattatgtcaagtgtattttctcatatac--tattgaatcgtcacatatatttccaacttttcgatatatttctcg 210  Q
    | |||||||||||||||||||||||||||||||||||||||||  ||||||||  ||||||||| |  ||||||||||||||||||| ||||||||||||    
T  8258734 cgtcttcatttgtctcatcaataatattatgtcaagtgtatttcatcatatactatattgaatcatgtcatatatttccaacttttcaatatatttctcg 8258635  T
Q  211 tcttttgtgacaatggaggttctaaagacatagtaatgcaatctcgtt-aaaaaattcttcaatatgcaactctaat 286  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||    
T  8258634 tcttttgtgacaatggaggttctaaagacatagtcatgcaatttcgttaaaaaaattcttcaatatgcaactctaat 8258558  T

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Target: chr2; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 319 - 410
Target Start/End: Complemental strand, 8258313 - 8258223
Alignment:
Q  319 ttaaatgaaaggtaaaattgatggatgataaccccaaataaacttgatgtttcttaatacatagtaaaggagaaaggaaaatatagaagttt 410  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8258313 ttaaataaaaggtaaaattgatggatgataaccccaaataaacttgatg-ttcttaatacatagtaaaggagaaaggaaaatatagaagttt 8258223  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 8258536 - 8258496
Alignment:
Q  287 aatgtgataaattgatgattgtgaattgattattaaatgaa 327  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8258536 aatgtgataaattgatgattgtgaattgattattaaatgaa 8258496  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 151
Target Start/End: Complemental strand, 13266875 - 13266789
Alignment:
Q  65 tctatttatgcacaattcaagctttcttgattttaggattactagcaacatcttcatttgtctcatcaataatattatgtcaagtgt 151  Q
    |||||||||||||||| ||||||| ||| ||||||  ||||||||| |||| | ||||| ||||  | |||| |||| |||||||||    
T  13266875 tctatttatgcacaatccaagcttccttaattttaaaattactagccacatgtccatttatctcgactataaaattacgtcaagtgt 13266789  T

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Target: chr7 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 65 - 169
Target Start/End: Original strand, 32471261 - 32471366
Alignment:
Q  65 tctatttatgcacaattcaagctttcttgattttaggattactagcaacatcttcatttgtctc-atcaataatattatgtcaagtgtattttctcatat 163  Q
    |||||||||||||||| ||||||| |||||||||||||| |||| | |||| | |||||| ||| | ||||||||||||| |||| |||||| |||||||    
T  32471261 tctatttatgcacaatccaagcttccttgattttaggatcactaactacatgtccatttgcctcaaccaataatattatgccaagcgtatttcctcatat 32471360  T
Q  164 actatt 169  Q
     |||||    
T  32471361 tctatt 32471366  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 289 - 340
Target Start/End: Original strand, 29292189 - 29292240
Alignment:
Q  289 tgtgataaattgatgattgtgaattgattattaaatgaaaggtaaaattgat 340  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  29292189 tgtgataaattgataattgtgaattgattattaagtgaaaggtaaaattgat 29292240  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 11364481 - 11364538
Alignment:
Q  287 aatgtgataaattgatgattgtgaattgattattaaatgaaaggtaaaattgatggat 344  Q
    |||||||||||||||| ||||| ||||| ||||||||| |||||||||||||| ||||    
T  11364481 aatgtgataaattgataattgtaaattgtttattaaatcaaaggtaaaattgagggat 11364538  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 6919437 - 6919337
Alignment:
Q  69 tttatgcacaattcaagctttcttgattttaggattactagcaacatcttcatttgtctc-atcaataatattatgtcaagtgtattttctcatatacta 167  Q
    |||||||||||| ||| ||||||| ||||||| || |||||| |||| | |||||| ||| | |||| || ||||| ||||||||||||| ||||| |||    
T  6919437 tttatgcacaatccaaactttcttaattttagtatcactagccacatgtccatttgcctcaaccaattatgttatgccaagtgtattttcccatatgcta 6919338  T
Q  168 t 168  Q
    |    
T  6919337 t 6919337  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 293 - 340
Target Start/End: Complemental strand, 13436886 - 13436839
Alignment:
Q  293 ataaattgatgattgtgaattgattattaaatgaaaggtaaaattgat 340  Q
    ||||| |||| |||||||||||||| | ||||||||||||||||||||    
T  13436886 ataaaatgataattgtgaattgattgtgaaatgaaaggtaaaattgat 13436839  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 23407716 - 23407668
Alignment:
Q  293 ataaattgatgattgtgaattgattattaaatgaaaggtaaaattgatg 341  Q
    ||||| |||| |||||||||||||| | |||||||||||||||||||||    
T  23407716 ataaaatgataattgtgaattgattgtgaaatgaaaggtaaaattgatg 23407668  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 293 - 340
Target Start/End: Original strand, 42954804 - 42954851
Alignment:
Q  293 ataaattgatgattgtgaattgattattaaatgaaaggtaaaattgat 340  Q
    ||||| |||| |||||||||||||| | ||||||||||||||||||||    
T  42954804 ataaaatgataattgtgaattgattgtgaaatgaaaggtaaaattgat 42954851  T

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