View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13311_high_3 (Length: 299)
Name: NF13311_high_3
Description: NF13311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13311_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 26812026 - 26812307
Alignment:
| Q |
1 |
tcatcacgatatatgggtgtaattgtgattctgatgcatttactcaaacttgtctgattgggcgcaggaaagatgcatatgaatatgagtttattaaaga |
100 |
Q |
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| T |
26812026 |
tcatcacaatatatgggtgtaattgtgattctgatgcatttactcaaacttgtctgattgggcgcaggaaagatgcatatgaatatgagtttattaagaa |
26812125 |
T |
|
| Q |
101 |
gatagttacggagatttccaaaaagatcaaccgtggtcttttagaagttgctgatcaccctgttgtgggacttgagtctcgactgttgcatgtaatgtca |
200 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
26812126 |
gatagttacagagatttccaaaaagatcaaccgtggtcttttagaagttgctgatcaccctattgtgggacttgagtctcgactgctgcatgtaatgtca |
26812225 |
T |
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| Q |
201 |
cttctggatgttggctgtgatgatggagcttgtatgattgggatatgtggaagtggaggattaggtaaaacgacacttactc |
282 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26812226 |
cttctggatgttgggtgtgatgatggagcatgtatgattgggatatgtggaagtggaggattgggtaaaacgacacttactc |
26812307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 13 - 282
Target Start/End: Original strand, 26618150 - 26618419
Alignment:
| Q |
13 |
atgggtgtaattgtgattctgatgcatttactcaaacttgtctgattgggcgcaggaaagatgcatatgaatatgagtttattaaagagatagttacgga |
112 |
Q |
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|||| ||| |||| |||||||||| ||||||| ||||||||||| ||||||||||| |||||| ||||||||| ||||||||||| |||||||||| || |
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| T |
26618150 |
atggctgtgattgagattctgatgtatttacttaaacttgtctggttgggcgcagggaagatgaatatgaatacgagtttattaagaagatagttacaga |
26618249 |
T |
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| Q |
113 |
gatttccaaaaagatcaaccgtggtcttttagaagttgctgatcaccctgttgtgggacttgagtctcgactgttgcatgtaatgtcacttctggatgtt |
212 |
Q |
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| T |
26618250 |
gatttggaacaagatcaattgtggtcttttagaagttgctgatcacctagttgttggacttgactctcgactgctacgtgtaaagtcgcttctggttttt |
26618349 |
T |
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| Q |
213 |
ggctgtgatgatggagcttgtatgattgggatatgtggaagtggaggattaggtaaaacgacacttactc |
282 |
Q |
| |
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| || | || |||| | || ||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
26618350 |
gtctataataatggtgtctgaatgattgggatatatggaagtggaggattgggtaaaacgacacttactc |
26618419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 13 - 282
Target Start/End: Original strand, 26724078 - 26724347
Alignment:
| Q |
13 |
atgggtgtaattgtgattctgatgcatttactcaaacttgtctgattgggcgcaggaaagatgcatatgaatatgagtttattaaagagatagttacgga |
112 |
Q |
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|||| ||| |||| |||||||||| ||||||| ||||||||||| ||||||||||| |||||| ||||||||| ||||||||||| |||||||||| || |
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| T |
26724078 |
atggctgtgattgagattctgatgtatttacttaaacttgtctggttgggcgcagggaagatgaatatgaatacgagtttattaagaagatagttacaga |
26724177 |
T |
|
| Q |
113 |
gatttccaaaaagatcaaccgtggtcttttagaagttgctgatcaccctgttgtgggacttgagtctcgactgttgcatgtaatgtcacttctggatgtt |
212 |
Q |
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| T |
26724178 |
gatttggaacaagatcaattgtggtcttttagaagttgctgatcacctagttgttggacttgactctcgactgctacgtgtaaagtcgcttctggttttt |
26724277 |
T |
|
| Q |
213 |
ggctgtgatgatggagcttgtatgattgggatatgtggaagtggaggattaggtaaaacgacacttactc |
282 |
Q |
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| || | || |||| | || ||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
26724278 |
gtctataataatggtgtctgaatgattgggatatatggaagtggaggattgggtaaaacgacacttactc |
26724347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 44 - 282
Target Start/End: Original strand, 26136432 - 26136667
Alignment:
| Q |
44 |
tcaaacttgtctgattgggcgcaggaaagatgcatatgaatatgagtttattaaagagatagttacggagatttccaaaaagatcaaccgtggtctttta |
143 |
Q |
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|||||||| |||| |||||||||||||||| | ||| ||||||||||||||||| |||||||||| | |||||| || ||||||||||||| ||||||| |
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| T |
26136432 |
tcaaacttatctggttgggcgcaggaaagaagaatacgaatatgagtttattaagaagatagttacagtgatttcaaacaagatcaaccgtgttctttta |
26136531 |
T |
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| Q |
144 |
gaagttgctgatcaccctgttgtgggacttgagtctcgactgttgcatgtaatgtcacttctggatgttggctgtgatgatggagcttgtatgattggga |
243 |
Q |
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| T |
26136532 |
catgttgccgatcaccccgttggg---ctcgagtctcgactgctgcaagtaaagtcacttctagatgttgactgtgataatggagtcggtctgattggga |
26136628 |
T |
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| Q |
244 |
tatgtggaagtggaggattaggtaaaacgacacttactc |
282 |
Q |
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||| |||||||||||||||||||||||| |||||||||| |
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| T |
26136629 |
tatatggaagtggaggattaggtaaaacaacacttactc |
26136667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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