View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13311_high_5 (Length: 233)
Name: NF13311_high_5
Description: NF13311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13311_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 33 - 216
Target Start/End: Complemental strand, 49956494 - 49956311
Alignment:
| Q |
33 |
agaatcaaatgatgaatgtgttaaaataagaaaatccaaacaaattacatatatatgaaaaggactatgtatatgtaatctaagagatatagcaagtttt |
132 |
Q |
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| T |
49956494 |
agaataaaatgatgaatgtgttaaaataagaaaatccaaacaaattacatatatatgaaaaggactatgtatatgtaatctaagagatatagcaagtttt |
49956395 |
T |
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| Q |
133 |
gaaagaataaaacaacaaatgtggggttaagtgtatccggccccaagttagattgcaaaaaccctaatgatagatactgatagc |
216 |
Q |
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| T |
49956394 |
gaaagaataaaacaacaaatgtggggttaagtgtatccggccccaagttagattgcaaaaaccctaatgatagatactgatagc |
49956311 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 39395532 - 39395572
Alignment:
| Q |
1 |
cactcaggagaacaacatcataagtagcctaaagaatcaaa |
41 |
Q |
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| T |
39395532 |
cactcaggagaacaacatcataaggagcctaaagaatcaaa |
39395572 |
T |
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