View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13311_low_11 (Length: 216)
Name: NF13311_low_11
Description: NF13311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13311_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 39 - 190
Target Start/End: Complemental strand, 5038534 - 5038383
Alignment:
| Q |
39 |
gagtaaggtataaagtgttttcgtggttatggtggcaattgtccattccattgaattttgttccatctatgttaagttttcatgtcttttggaaatgatg |
138 |
Q |
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| T |
5038534 |
gagtaaggtataaagtgttttcgtggttatggtggcaattgtccattccattgaattttgttccatctatattaagttttcatgtcttttggaaatgatg |
5038435 |
T |
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| Q |
139 |
atgtcttctatgacgacaagattctatgtgttgaacaattcgtgaattgaat |
190 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
5038434 |
atgtcttctatgacgacaagattctaagtgttgaacaattcgtgaatagaat |
5038383 |
T |
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