View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13311_low_2 (Length: 568)
Name: NF13311_low_2
Description: NF13311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13311_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 9 - 553
Target Start/End: Complemental strand, 2136605 - 2136062
Alignment:
| Q |
9 |
gacatcatcataaatacacaataacacatctctataaatgttcaccatttcttctcactcaccccctcttctgtttaagaaacagccttgagagaaacag |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2136605 |
gacatcatcataaatacacaataacacatctctataaatgttcaccatttcttctcactcaccccctcttctgtttaagaaacagccttgagagaaacag |
2136506 |
T |
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| Q |
109 |
aatcaaatcctttccttaaccttcacgccttcatttaaaaaggttcaaccttttaaccaatctctgaactctttctttgacccttttttcacttcaccat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2136505 |
aatcaaatcctttccttaaccttcacgccttcatttaaaaaggttcaaccttttaaccaatctctgaactctttctttgacccttttttcacttcac-at |
2136407 |
T |
|
| Q |
209 |
taaactccttcctaactctttaaattcccactttatcatcattcacacacataacacnnnnnnnnnnnnnnnctagtacactacactaaactctactagt |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2136406 |
taaactccttcctaactctttaaattcccactttatcatcattcacacacataacacaaaaaagtgaaaaaactagtacactacactaaactctactagt |
2136307 |
T |
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| Q |
309 |
tctcaagttctcttacatggatcctttcaaagaaaaagtaaagtgtgtatggattcatggacctatcatagtaggtgctggtccttcaggtatagcagta |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2136306 |
tctcaagttctcttacatggatcctttcaaagaaaaagtaaagtgtgtatggattcatggacctatcatagtaggtgctggtccttcaggtatagcagta |
2136207 |
T |
|
| Q |
409 |
gctgcttgtttatcagaacaaggagtaccaagtctcattcttgagagaagtgattgcatagcttcactatggcaaaatagaacctatgaccgtttaaaac |
508 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2136206 |
gctgcttgtttatcagagcaaggagtaccaagtctcattcttgagagaagtgattgcatagcttcactatggcaaaatagaacctatgaccgtttaaaac |
2136107 |
T |
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| Q |
509 |
ttcatttacctaaacatttttgtgaactacctatgatgagttttc |
553 |
Q |
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| T |
2136106 |
ttcatttacctaaacatttttgtgaactacctatgatgagttttc |
2136062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 461 - 541
Target Start/End: Complemental strand, 29857940 - 29857860
Alignment:
| Q |
461 |
attgcatagcttcactatggcaaaatagaacctatgaccgtttaaaacttcatttacctaaacatttttgtgaactaccta |
541 |
Q |
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||||||||||||||||||||||||| ||||| |||||| | ||||||||||| | |||||||| || ||| ||||||||| |
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| T |
29857940 |
attgcatagcttcactatggcaaaaaagaacatatgacagattaaaacttcacctccctaaacaattctgtcaactaccta |
29857860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 541
Target Start/End: Original strand, 39839088 - 39839170
Alignment:
| Q |
459 |
tgattgcatagcttcactatggcaaaatagaacctatgaccgtttaaaacttcatttacctaaacatttttgtgaactaccta |
541 |
Q |
| |
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|||||||||||| |||||||||||||| |||||||| ||| | || |||||||| | || ||||| || ||| ||||||||| |
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| T |
39839088 |
tgattgcatagcatcactatggcaaaaaagaacctacgacagattgaaacttcaccttccaaaacaattctgtcaactaccta |
39839170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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