View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13311_low_3 (Length: 419)
Name: NF13311_low_3
Description: NF13311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13311_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 412
Target Start/End: Complemental strand, 1254879 - 1254478
Alignment:
| Q |
17 |
ccaagcacttcagctgaagccctaagaagatcttgcaactcaaaaccacctttatcttccctaacaaaattcaattctccattttcacctttactaaaat |
116 |
Q |
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| T |
1254879 |
ccaagcacttcagctgaagccctaagaagatcttgcaactcaaaaccacctttatcttccctaacaaaattcaattctccattttcacctttactaaaat |
1254780 |
T |
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| Q |
117 |
caccagctaaatcaatggattttgtctccttgacacttggact------gctttcagaattcaattgtaggcctaatatgggttggtcttgttctgatct |
210 |
Q |
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| T |
1254779 |
caccagctaaatcaatggattttgtcaccttgacacttggacttggattgctttcagaattcagttgtagccctattatgggttggtcttgttctgatct |
1254680 |
T |
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| Q |
211 |
tcgtctccggcggctttggataaacaaaagtgctaatattgaagctaaaacaaccattgctaccactacaatgacaactataaggannnnnnngttcttc |
310 |
Q |
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| T |
1254679 |
tcgtcgctggcggctttggataaacaaaagtgctaatattgaagctaaaaccaccatagataccactacaatgacaactataaggatttttttgttcttc |
1254580 |
T |
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| Q |
311 |
tttccatttccttgagttgagaaagctgaattagtttgcacaatagattttgttggaggtatgttgcaaggattgttcaaaggttttccacataggcctt |
410 |
Q |
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| T |
1254579 |
tttccatttccttgagttgagaaaactgaattagtttgcacaatagattttgttggaggtatgttgcaaggattgttcaaaggttttccacataggcctt |
1254480 |
T |
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| Q |
411 |
tg |
412 |
Q |
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| T |
1254479 |
tg |
1254478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 348 - 406
Target Start/End: Complemental strand, 1246139 - 1246081
Alignment:
| Q |
348 |
gcacaatagattttgttggaggtatgttgcaaggattgttcaaaggttttccacatagg |
406 |
Q |
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||||||||||||||||||| | |||||||| |||||| |||||||||||||||||||| |
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| T |
1246139 |
gcacaatagattttgttggggacatgttgcatggattgctcaaaggttttccacatagg |
1246081 |
T |
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