View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13311_low_4 (Length: 396)
Name: NF13311_low_4
Description: NF13311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13311_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 31319857 - 31320236
Alignment:
| Q |
19 |
tgatgtgaagtcattaatgagagatgtgtatgttcttcattttcagaatctaaagatgaatttatttcattgtcttcccatgcaatatatgctttctttg |
118 |
Q |
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| T |
31319857 |
tgatgtgaagtcattaatgagagatgtgtatgttcttcgttttcagaatctaaagatgaatttatttcattgtcttcccatgcaatatatgctttctttg |
31319956 |
T |
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| Q |
119 |
atcttttgttcttatttcctttaaatccatttttcttttgaagagatggacaatcaacattgatatgaccgtgttttacacactcaaaacaagtc----- |
213 |
Q |
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| T |
31319957 |
atctt--------atttcctttaaatccatttttcttttgaagagatggacaatcaacattgatatgaccgtgttttacaaactcaaaacaagtgaagtt |
31320048 |
T |
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| Q |
214 |
---------------tctttccttattcttcacaagtctctttccttgaacaaatttgattgtcttgtctttctttaagaattttcttannnnnnnagtt |
298 |
Q |
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| T |
31320049 |
ttgatttgatgttaatgtttccttattcttcacaagtctctttccttgaacaaatttgattgtcttgtctttctttaagaattttcttatttttttagtt |
31320148 |
T |
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| Q |
299 |
tcaactcatgttcttgcagttttccaaatagtgccgccagtgacatttttcctagggattttattttctgaaatggttgtcgcctttg |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31320149 |
tcaactcatgttcttgcagttttccaaatagtgccgccagtgacatttttcctagggattttattttctgaaatggttgtcgcctttg |
31320236 |
T |
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