View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13311_low_5 (Length: 390)
Name: NF13311_low_5
Description: NF13311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13311_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 44123837 - 44123621
Alignment:
| Q |
8 |
aagcataggctaagtgtatatttggcaccattttgtaaaacgtggtttgatgaaaaccacgttggtgtaaaagttagtgtttggagtttttcgaaatcac |
107 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44123837 |
aagcataggctaagtgcatgtttggcaccattttgtaaaacgtggtttgatgaaaaccacgttggtgtaaaagttagtgtttggagtttttcgaaatcac |
44123738 |
T |
|
| Q |
108 |
gacaaaaatgcactgtgaaatgtgcaaatacgtttttgtgtgttgcaaatgggaaattaaacacacactaagttggatagacatatcaagtttggtttaa |
207 |
Q |
| |
|
||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44123737 |
gacaaaaatgcaccgtgaaatatgcatatatgtttttgtgtgttgcaaatgggaaactaaacacacactaagttggatagacatatcaagtttggtttaa |
44123638 |
T |
|
| Q |
208 |
ggctatacgtttgcatt |
224 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
44123637 |
ggctatatgtttgcatt |
44123621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 238 - 366
Target Start/End: Complemental strand, 44122648 - 44122522
Alignment:
| Q |
238 |
tcactggtgttgttctcatgtttggattccattacatcgaagtgtaaattattactaagagagggatgaggagaagaaaaaatatagtccaattaaaata |
337 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44122648 |
tcactgatgttgttctcatatttggattccattacatcgaagtgtaaattaatactaagagagggatgaggaga--aaaaaatatagtccaattaaaata |
44122551 |
T |
|
| Q |
338 |
ttcacggtgccccgagttttatagaaaat |
366 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
44122550 |
ttcacggtgccccgagttttatagaaaat |
44122522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University