View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13311_low_7 (Length: 257)
Name: NF13311_low_7
Description: NF13311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13311_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 24620681 - 24620908
Alignment:
| Q |
19 |
gaagtctctatttcaaggcaatcttgatgctcaaatgcgatgaagtaccaatatagacaagacacgtgaacactagtaataaaatatgaaaatagaagta |
118 |
Q |
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| T |
24620681 |
gaagtctctatttcaaggcaatcttgatgctcaaatgcgatgaagtaccaataaagacaagacatgtgaacactagtaataaaatatgaaaatagaagta |
24620780 |
T |
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| Q |
119 |
agtgaatgtaattacgtgcgttagtgtcgtatgttggaccttgaatttgatgtgtggggctacataggtcaaatgtagcatgggttcctcgccagatttt |
218 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24620781 |
agtgaatgtaattacgtgcgtcagtgtcgtatgttggaccttcaatttgatgtatggggctacataggtcaaatgtagcatgggttcctcgccagattta |
24620880 |
T |
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| Q |
219 |
aatgaatgaagacctatttaaggttcat |
246 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
24620881 |
aatgaatgaagacctatttaaggttcat |
24620908 |
T |
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