View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13312_low_1 (Length: 671)
Name: NF13312_low_1
Description: NF13312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13312_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 52002537 - 52002609
Alignment:
| Q |
18 |
gaaaagaagtgacatatggaatatgcttataatacttggttaaggacgaaaaacaaagttcgattgctgatga |
90 |
Q |
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| T |
52002537 |
gaaaagaagagacgtatgcaatatgcttataatacttggttaaggacgaaaaacaaagttcaattgctgatga |
52002609 |
T |
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Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 5174725 - 5174806
Alignment:
| Q |
9 |
aacacagacgaaaagaagtgacatatggaatatgcttataatacttggttaaggacgaaaaacaaagttcgattgctgatga |
90 |
Q |
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| T |
5174725 |
aacacaaacgaaaagaagtgagatatggaatatgcttattatatttggttaaggatgaaaaacaaacttcaattgctgatga |
5174806 |
T |
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