View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13312_low_10 (Length: 220)
Name: NF13312_low_10
Description: NF13312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13312_low_10 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 34593921 - 34594140
Alignment:
| Q |
1 |
attccatcctccaggtccagcatacgatgcccatttattgtttgaatctgctatagaagtcatgctagggagaaagtaaaataattttgatcacaatatg |
100 |
Q |
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| T |
34593921 |
attccatcctccaggtccagcatacgatgcccatttattgtttgaatctgctatagaagtcatgctagggagaaagtaaaataattttgatcacaatatg |
34594020 |
T |
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| Q |
101 |
gaaaatgaagcaaagtaattgaacaatacatatcaatatagtgagtttctgttttttccattgattccttacctattccaattatcttcaatatcacctg |
200 |
Q |
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| T |
34594021 |
gaaaatgaagcaaagtaattgaacaatacatatcaatatagtgagtttctgttttttccattgattccttacctattccaattatcttcaatatcacctg |
34594120 |
T |
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| Q |
201 |
ttgttctccaactatttccc |
220 |
Q |
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| T |
34594121 |
ttgttctccaactatttccc |
34594140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 34578131 - 34578196
Alignment:
| Q |
1 |
attccatcctccaggtccagcatacgatgcccatttattgtttgaatctgctatagaagtcatgct |
66 |
Q |
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| T |
34578131 |
attccatcctccaggtccagcataagatgcccatttgtcgtttgcatctataatagaagtcatgct |
34578196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 34578391 - 34578440
Alignment:
| Q |
171 |
acctattccaattatcttcaatatcacctgttgttctccaactatttccc |
220 |
Q |
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| T |
34578391 |
acctcttccaattatcttctatatcacccgtggttctccaactatttccc |
34578440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 32590371 - 32590442
Alignment:
| Q |
1 |
attccatcctccaggtccagcatacgatgcccatttattgtttgaatctgctatagaagtcatgctagggag |
72 |
Q |
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| T |
32590371 |
attccatcctccaggtccagcataagatgcccatttatcgtttacatctattatagaagtcatcctagggag |
32590442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 32601041 - 32601092
Alignment:
| Q |
169 |
ttacctattccaattatcttcaatatcacctgttgttctccaactatttccc |
220 |
Q |
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| T |
32601041 |
ttacctattccagttatcttcaatatctcctgttgttctccaactatttccc |
32601092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 32590570 - 32590621
Alignment:
| Q |
169 |
ttacctattccaattatcttcaatatcacctgttgttctccaactatttccc |
220 |
Q |
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|||||||| ||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
32590570 |
ttacctatgccaattatctttaatatctcctgttgttctccaactatttccc |
32590621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 32600819 - 32600885
Alignment:
| Q |
1 |
attccatcctccaggtccagcatacgatgcccatttattgtttgaatctgctatagaagtcatgcta |
67 |
Q |
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|||||||||||||||||||||||| ||||||||||| | ||| |||| |||||||||||||||| |
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| T |
32600819 |
attccatcctccaggtccagcataagatgcccatttgtcatttacatctattatagaagtcatgcta |
32600885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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