View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13312_low_2 (Length: 521)
Name: NF13312_low_2
Description: NF13312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13312_low_2 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 4e-70; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 15633618 - 15633449
Alignment:
| Q |
19 |
agtctaatcccaacacaagtcttttaaacttgatatctttcttaatattatgattgatcgtttcaaacaatcaaccaaaccctttttcttagaatacaat |
118 |
Q |
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| T |
15633618 |
agtctaatcc-aacacaaatattttaaacttgacatctttcttaatattatgattaatcgtttcaaacaatcaaccaaaccctttttcttagaatacaaa |
15633520 |
T |
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| Q |
119 |
aaattgttaaacggttagaaaattaccaagtccttatggatatgataatctgacatactttgataccttta |
189 |
Q |
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| T |
15633519 |
aaattgttaaacggttagaaaattaccaagtccttatggatatgataatcttaaatactttgataccttta |
15633449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 15614248 - 15614177
Alignment:
| Q |
290 |
ttattctataaaaccctagccgtctttatcgttttgattatctctttctctattttgcattgttcttgttaa |
361 |
Q |
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| T |
15614248 |
ttattctatgaaaccctagttgtctttatcgttttgattatctctttctctattttgcattgttcttgttaa |
15614177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 15585080 - 15584981
Alignment:
| Q |
71 |
attgatcgtttcaaacaatcaaccaaaccctttttcttagaatac-aataaattgttaaacggttagaaaattaccaagtccttatggatatgataatct |
169 |
Q |
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| T |
15585080 |
attgattgtttcaaacaatcaatcaagccctttttcttagaatacaaaaaaattgttaaacaactagaaaattatcaagtacctatgaatatgataatct |
15584981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 254
Target Start/End: Complemental strand, 15614361 - 15614312
Alignment:
| Q |
207 |
tgttagataataaagtatt-tgcttaagttattgg-cctttatattagca |
254 |
Q |
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| T |
15614361 |
tgttagataataaagtattgggcttaagttattggacctttatattagca |
15614312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 50294658 - 50294702
Alignment:
| Q |
207 |
tgttagataataaagtatttgcttaagttattggcctttatatta |
251 |
Q |
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| T |
50294658 |
tgttagatgataaagtattggcttaagttattgacctttatatta |
50294702 |
T |
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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 406359 - 406307
Alignment:
| Q |
204 |
tattgttagataataaagtatt-tgcttaagttatt-ggcctttatattagca |
254 |
Q |
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| T |
406359 |
tattgttagataataaagtattaggtttaagttattgggcctttatattagca |
406307 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 346
Target Start/End: Complemental strand, 33423975 - 33423919
Alignment:
| Q |
290 |
ttattctataaaaccctagccgtctttatcgttttgattatctctttctctattttg |
346 |
Q |
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| T |
33423975 |
ttattctacgaaaccctagccgtctttattgttatcgttctctctttctctattttg |
33423919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 16869547 - 16869579
Alignment:
| Q |
254 |
atattagcaagttagagttcattagattttatt |
286 |
Q |
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| T |
16869547 |
atattagtaagttagagttcattagattttatt |
16869579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 15629417 - 15629385
Alignment:
| Q |
254 |
atattagcaagttagagttcattagattttatt |
286 |
Q |
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| T |
15629417 |
atattagtaagttagagttcattagattttatt |
15629385 |
T |
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