View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13312_low_3 (Length: 419)
Name: NF13312_low_3
Description: NF13312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13312_low_3 |
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| [»] scaffold0999 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 11474395 - 11474785
Alignment:
| Q |
18 |
agaattcatctctaatgatatagaaaaatgaaaaatgacatctatgatttatggtgtaagtatgagcaaactaaaaggtattgggtatacagaagatgaa |
117 |
Q |
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| T |
11474395 |
agaattcatctctaatgatatagaaaaatgaaaaatgacatctatgatttatggtgtaagtatgagcaaactaaaaggtattgggtatacagaagatgaa |
11474494 |
T |
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| Q |
118 |
caaaaaccaaaggttcatactttagataagacaaaaatgtagtttactcttattgcatgaaaataggacaagaaaagaaagcatgttcaatgttaaaaga |
217 |
Q |
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| T |
11474495 |
caaaaaccaaaggttcatactttagataagacaaaaatgtagtttactcttattgcatgaaaataggacaagaaaagaaagcatgttcaatgttaaaaga |
11474594 |
T |
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| Q |
218 |
tttcatgcttaaaacagtgaaaaaggacaagtcctagaaaactaacgccagagacctgtcaagatatgggtacctaagaaagaaatcgcttatgttgcat |
317 |
Q |
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| T |
11474595 |
tttcatgcttaaaatagtgaaaaaggacaagtcctagaaaactaacgttagagacctctcaagatatgggtacctaagaaagaaatcgtttatgttgcat |
11474694 |
T |
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| Q |
318 |
atttgattagaaataaagtcaagacaccaatcatggtacctgaataatgcctgctcttggcacatgatgagagaaaagcatgttgatgatg |
408 |
Q |
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| T |
11474695 |
attcgattagaaataaagtcaagacaccaatcattgtacttgaataatgcctgctcttggcacatgacgggagaaaagcatattgatgatg |
11474785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 13153910 - 13153844
Alignment:
| Q |
49 |
aaaatgacatctatgatttatggtgtaagtatgagcaaactaaaaggtattgggtatacagaagatg |
115 |
Q |
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| T |
13153910 |
aaaattacatctatgatttatggtgtaagaaagaagaaactaaaaggtattgaatatatagaagatg |
13153844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0999 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0999
Description:
Target: scaffold0999; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 3109 - 3030
Alignment:
| Q |
154 |
atgtagtttactcttattgcatgaaaataggacaagaaaagaaagcatgttcaatgttaaaagatttcatgcttaaaaca |
233 |
Q |
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| T |
3109 |
atgtagtttgatcttactgcatgaagagaggacatgacaagaaagtttgttcaatgttaaaagctatcaagcttaaaaca |
3030 |
T |
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