View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13312_low_4 (Length: 413)
Name: NF13312_low_4
Description: NF13312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13312_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 9e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 63 - 244
Target Start/End: Original strand, 12949105 - 12949283
Alignment:
| Q |
63 |
tagagctattttttatacttaatataataaaaattgcacatgtaaagtctttccttgatttatttactttattaaagtttcacatgattgtacatctcac |
162 |
Q |
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| T |
12949105 |
tagagctatttttgatacttaatataataaaaattgcacatgtgaagtctttccttgatttatttacttta---aagtttcacatgattgtacatctcac |
12949201 |
T |
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| Q |
163 |
cttgtcattggccatgtagacaatcttcatttccgttttaataccttttatttttcactcattctggtatctgcattgctaa |
244 |
Q |
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| T |
12949202 |
cttgtccttggccatgtagacaatcttcatttccgttttaataccttttatttttcactcattctggtatctgcattgctaa |
12949283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 241 - 398
Target Start/End: Original strand, 12949979 - 12950132
Alignment:
| Q |
241 |
ctaagtgatgatgttcaaaaccaacaaatgcgacaccgatgtatgaattaatagtannnnnnnnnnnnnnnnnctttaaaattcgatatctgacccaaaa |
340 |
Q |
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| T |
12949979 |
ctaagtgatgatgttcaaaaccaacaaatgtgacacctacgtatgaattaatagtatatattttttttttc----ttaaaatttgatatctgacccaaaa |
12950074 |
T |
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| Q |
341 |
actaaatctgatgggttcaatcatgtcgtccgcttatgaaagcttcatctaaaatatg |
398 |
Q |
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| T |
12950075 |
actaaatccgatgggttcaatcttgtcgtccacttatgaaagcttcatctaaaatatg |
12950132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 12949046 - 12949088
Alignment:
| Q |
22 |
gaatgagtagttgagattctgctgcataaattatttagtcgtag |
65 |
Q |
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| T |
12949046 |
gaatgagtagttgagattctgctgcat-aattatttagtcgtag |
12949088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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