View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13312_low_7 (Length: 249)
Name: NF13312_low_7
Description: NF13312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13312_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 7023298 - 7023550
Alignment:
| Q |
1 |
cagaagctagcaagggctgttggagggaagacagttgaggaagtgaaaaagcattatgagatgttagttgaagatttgaagcaaattgaggaaggtcatg |
100 |
Q |
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| T |
7023298 |
cagaagctagcaagggctgttggagggaagacagttgaggaagtgaaaaggcattatgagatgttagttgaagatttgaagcaaattgaggaaggtcatg |
7023397 |
T |
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| Q |
101 |
ttcctttgcccaaatacagaaatgctgcaacaattaaaggttacaattacagtgacgaagaacaaagg----taatttttactacttaatccttnnnnnn |
196 |
Q |
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| T |
7023398 |
ttcctttgcccaaatacagaaatgctgcaacaattaaaggttacaattacagtgacgaagaacaaaggtaattaatttttactacttaatccttaaaaaa |
7023497 |
T |
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| Q |
197 |
ntattgtagatagacaaaatataatagtcattgaaaactcataaagagataga |
249 |
Q |
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| T |
7023498 |
atattgtagatagataaaatataatagtcattgaaaactcataaagagataga |
7023550 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 52365442 - 52365486
Alignment:
| Q |
16 |
gctgttggagggaagacagttgaggaagtgaaaaagcattatgag |
60 |
Q |
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| T |
52365442 |
gctgtgggagggaagactgttgaagaagtgaaaaggcattatgag |
52365486 |
T |
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