View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13312_low_9 (Length: 236)
Name: NF13312_low_9
Description: NF13312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13312_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 25914603 - 25914803
Alignment:
| Q |
20 |
aatccttaatacccttcaaataaaatgtgtagaaaatcttaaacggaaaaacaatttgattgagtttcacttggcctgtaacaccttcaaaaattccagt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25914603 |
aatccttaatacccttcaaataaaatgtgtagaaaatcttaaatggaaaaacaatttgattgagcttcacttggcctgtaacaccttcaaaaattccagt |
25914702 |
T |
|
| Q |
120 |
accaccagtcacagttagataagtgtcctcataggttaggtaaggtccttgcacagctatttgaccatagtctccaaaatggaaactgtagattgcttca |
219 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
25914703 |
accaccagtcacagttagatatgtgtcctcataggttaggtaaggtccttgcacagctatttgaccatagtctccaacgtgaaaactgtagattgcttca |
25914802 |
T |
|
| Q |
220 |
t |
220 |
Q |
| |
|
| |
|
|
| T |
25914803 |
t |
25914803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 5689919 - 5690122
Alignment:
| Q |
20 |
aatccttaatacccttcaaataaaatgtgtagaaaatcttaaacggaaaaacaatttgattgagtttcacttggcctgtaacaccttcaaaaattccagt |
119 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||| || |||||||||||||||| | |||||||| || ||||||||||||| ||||||| |
|
|
| T |
5689919 |
aatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaacaccttcaaatattccaga |
5690018 |
T |
|
| Q |
120 |
accaccagtcacagttagataagtgtcctc---ataggttaggtaaggtccttgcacagctatttgaccatagtctccaaaatggaaactgtagattgct |
216 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||| || |||||||| || |||| |||||||| || |||||||||||||||||||||||| |
|
|
| T |
5690019 |
accaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagtgaccataatcaccaaaatggaaactgtagattgct |
5690118 |
T |
|
| Q |
217 |
tcat |
220 |
Q |
| |
|
|||| |
|
|
| T |
5690119 |
tcat |
5690122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 6792768 - 6792565
Alignment:
| Q |
20 |
aatccttaatacccttcaaataaaatgtgtagaaaatcttaaacggaaaaacaatttgattgagtttcacttggcctgtaacaccttcaaaaattccagt |
119 |
Q |
| |
|
|||||||||||||||| | |||||||||||| || |||||||| ||||| |||||||||| || || ||||| || |||||||||||| |||||||| |
|
|
| T |
6792768 |
aatccttaatacccttaagataaaatgtgtaaaatatcttaaatggaaacacaatttgatgaagcttaacttgaccataaacaccttcaaatattccagt |
6792669 |
T |
|
| Q |
120 |
accaccagtcacagttagataagt---gtcctcataggttaggtaaggtccttgcacagctatttgaccatagtctccaaaatggaaactgtagattgct |
216 |
Q |
| |
|
||||||||||||| | |||||| |||||||| |||| |||| |||||||||| || |||||||| |||||||||| ||||| || |||||| |
|
|
| T |
6792668 |
tccaccagtcacagccaaataagtatcctcctcataagttaaataagaaccttgcacagaaatatgaccatactctccaaaataaaaactatatattgct |
6792569 |
T |
|
| Q |
217 |
tcat |
220 |
Q |
| |
|
|||| |
|
|
| T |
6792568 |
tcat |
6792565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 6800239 - 6800039
Alignment:
| Q |
20 |
aatccttaatacccttcaaataaaatgtgtagaaaatcttaaacggaaaaacaatttgattgagtttcacttggcctgtaacaccttcaaaaattccagt |
119 |
Q |
| |
|
|||||||||||||| | | |||||||||||| || | |||||| ||||| |||||||||| || || ||||| || |||||||||||| |||||||| |
|
|
| T |
6800239 |
aatccttaatacccataagataaaatgtgtaaaatagcttaaatggaaacacaatttgatgaagcttaacttgaccataaacaccttcaaatattccagt |
6800140 |
T |
|
| Q |
120 |
accaccagtcacagttagataagtgtcctcataggttaggtaaggtccttgcacagctatttgaccatagtctccaaaatggaaactgtagattgcttca |
219 |
Q |
| |
|
|||||||| ||| | ||||| |||||||| |||| |||| ||||| ||| || ||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
6800139 |
tccaccagttacaaccaagtaagtatcctcataagttaaataagaaccttgtacataaatatgaccatagtctccaaaataaaaactgtatattgcttca |
6800040 |
T |
|
| Q |
220 |
t |
220 |
Q |
| |
|
| |
|
|
| T |
6800039 |
t |
6800039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 220
Target Start/End: Complemental strand, 22227559 - 22227369
Alignment:
| Q |
30 |
acccttcaaataaaatgtgtagaaaatcttaaacggaaaaacaatttgattgagtttcacttggcctgtaacaccttcaaaaattccagtaccaccagtc |
129 |
Q |
| |
|
||||||||| ||||| |||||||| | |||||| || || |||| ||| | ||||| ||||| || |||||||||||| ||||||| |||||| || |
|
|
| T |
22227559 |
acccttcaagtaaaaagtgtagaacagcttaaatgggaacacaagttgttgaagtttaacttgtccataaacaccttcaaagattccagaaccacctgtt |
22227460 |
T |
|
| Q |
130 |
acagttagataagtgtcctcataggttaggtaaggtccttgcacagctatttgaccatagtctccaaaatggaaactgtagattgcttcat |
220 |
Q |
| |
|
| || ||||| ||||| | || || || ||||||||||| || | ||| ||||||||||||||||| | ||| ||||| |||||||||| |
|
|
| T |
22227459 |
atagcaagatatgtgtcttggtatgtgagataaggtccttgtactgatatatgaccatagtctccaaagtagaagctgtaaattgcttcat |
22227369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University