View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13313_low_1 (Length: 853)
Name: NF13313_low_1
Description: NF13313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13313_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 648; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 26 - 815
Target Start/End: Original strand, 24224490 - 24225284
Alignment:
| Q |
26 |
aaactgaccaaaatggaatatattaccacaaaagattctccccaatacaaagagcgcacatgaagaaatccgagcgcattaagatacataagnnnnnnnn |
125 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24224490 |
aaaccgaccaaaatggaatatattaccacaaaagattctccccaatacaaagagcgcacatgaagaaatccgagtgcattaagatacataagaaaaacaa |
24224589 |
T |
|
| Q |
126 |
nnnnntatagaaaacttgagttagtagcttagctaatagataactcagtgttaagttattggtattctatgaaactctaactgtatttgttagtcacttt |
225 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24224590 |
aaaaatatagaaaacttgagtcagtagcttagctaatagataactgagtgttgagttattggtattctatgaaacgctaactgtatttgttagtcacttt |
24224689 |
T |
|
| Q |
226 |
gttattttatcttattatctatattgttaacatggtatccaaagcatgatttaatcctcattgaattgtttattgcttccgctattgagttcccaaaagt |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
24224690 |
gttattttatcttattatctatattgttaacatggtattcaaagcatgatctaatcctcattgaattgtttatcgctttcgctattgagttcccaaaagt |
24224789 |
T |
|
| Q |
326 |
ttaaggaatgttgtgtgattgatttggtttaatttttaatgttggtcatttgttcggnnnnnnnntttatgattgaagaaaaagcatggttccttccgtc |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
24224790 |
ttaaggaatgttgtgtgattgatttggtttaatttttaatgttggtcatttattcggaaaaaaaatttatgattgaagaaaaagcatggttccttccgtc |
24224889 |
T |
|
| Q |
426 |
aattgcttggtagaaacaaattagagaaactgggaacgtgatgtttgcttcgaaatggtaatttgcaacattccactaattggtattatttctttggatt |
525 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24224890 |
aattgcttggtagaaacaaattagagaaattgggaacatgatgtttgcttcgaaatggtaatttgcaacattccactaattggtattatttctttggatt |
24224989 |
T |
|
| Q |
526 |
tttagattcacggtgtgcatattgtttggatggttttgagcacgttttgaaattaattgcatcaatcatcaatattttggattttagagacgtagaagtt |
625 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24224990 |
tttagattcacggtgtgcatattgtttggatggttttgagcacgttttgaaattaattgcatcaatcatcaatattttggattttagagacgtagaagtt |
24225089 |
T |
|
| Q |
626 |
attctttcaccgtggtatttacttg-----tttctttgatgcttgtcgtcattggttaatgtttgttcggtttgctccggttgttggttgatatgtatag |
720 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
24225090 |
attctttcaccatggtatttacttgtttaatttctttgatgcttgtcgtcattggttaatgtttgttcggtctgctccggttgttggttgatatgtatag |
24225189 |
T |
|
| Q |
721 |
ttttgtcatgttttgggatgtgtatgggtgttcttttcgtttgagtttttgtctttggatcgctcttgttcttggtttatttgtttgaggatgca |
815 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24225190 |
ttttgtcatgttttgggatgtgtatgggtgttctttttgtttgagtttttgtctttggatcgctcttgttcttggtttatttgtttgaggatgca |
24225284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 176 - 269
Target Start/End: Original strand, 11096893 - 11096986
Alignment:
| Q |
176 |
ttaagttattggtattctatgaaactctaactgtatttgttagtcactttgttattttatcttattatctatattgttaacatggtatccaaag |
269 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||| ||| |||||| |||||||||| | || |||| |||||||||||||||| |||| |||| |
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| T |
11096893 |
ttaaggtataggtattctatgaaactctaactgtcttttttagtctctttgttattctctccgattagctatattgttaacatgatatctaaag |
11096986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 250 - 360
Target Start/End: Complemental strand, 17927870 - 17927761
Alignment:
| Q |
250 |
tgttaacatggtatccaaagcatgatttaatcctcattgaattgtttattgcttccgctattgagttcccaaaagtttaaggaatgttgtgtgattgatt |
349 |
Q |
| |
|
|||||||||||||| || |||||| ||| ||| || || |||||||| | ||||||||||||||||| ||||||||| |||||||||||||||||||| |
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|
| T |
17927870 |
tgttaacatggtatacagagcatggtttgatcgtctttaaattgtttgtagcttccgctattgagttttcaaaagttt-gggaatgttgtgtgattgatt |
17927772 |
T |
|
| Q |
350 |
tggtttaattt |
360 |
Q |
| |
|
||||||||||| |
|
|
| T |
17927771 |
tggtttaattt |
17927761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 9e-20; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 249 - 359
Target Start/End: Original strand, 10740746 - 10740855
Alignment:
| Q |
249 |
ttgttaacatggtatccaaagcatgatttaatcctcattgaattgtttattgcttccgctattgagttcccaaaagtttaaggaatgttgtgtgattgat |
348 |
Q |
| |
|
|||||||||||||||| | |||||| ||| |||||| |||||| | | | |||||||| |||||||||||||||||| ||||||||||||||||||| |
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|
| T |
10740746 |
ttgttaacatggtatcaagagcatggtttgatcctccttgaatgatctgtcgcttccgcagttgagttcccaaaagtttg-ggaatgttgtgtgattgat |
10740844 |
T |
|
| Q |
349 |
ttggtttaatt |
359 |
Q |
| |
|
||||||||||| |
|
|
| T |
10740845 |
ttggtttaatt |
10740855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 13166651 - 13166727
Alignment:
| Q |
300 |
gcttccgctattgagttcccaaaagtttaaggaatgttgtgtgattgatttggtttaatttttaatgttggtcatttg |
377 |
Q |
| |
|
||||||||| ||| |||||||||| ||| ||||| ||||||||||||||||||||||||| || |||||||| |||| |
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| T |
13166651 |
gcttccgcttttgtgttcccaaaaatttg-ggaattttgtgtgattgatttggtttaatttatagtgttggtcttttg |
13166727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 247 - 363
Target Start/End: Original strand, 9401768 - 9401883
Alignment:
| Q |
247 |
tattgttaacatggtatccaaagcatgatttaatcctcattgaattgtttattgcttccgctattgagttcccaaaagtttaaggaatgttgtgtgattg |
346 |
Q |
| |
|
|||||||||||||||||| | | | || | | |||||| ||||| | ||| | |||||| | |||||||||||||| ||| ||||| ||||||||||| |
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|
| T |
9401768 |
tattgttaacatggtatcgagaacttgttctgatcctccttgaactatttgtctcttccgttgttgagttcccaaaaatttg-ggaatattgtgtgattg |
9401866 |
T |
|
| Q |
347 |
atttggtttaattttta |
363 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
9401867 |
atttggtttgattttta |
9401883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 3950609 - 3950652
Alignment:
| Q |
239 |
attatctatattgttaacatggtatccaaagcatgatttaatcc |
282 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||| |||| |
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|
| T |
3950609 |
attatctatattgttaacatggtatcgaaagcatggtttgatcc |
3950652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 42631591 - 42631524
Alignment:
| Q |
183 |
attggtattctatgaaactctaactgtatttgttagtcactttgttattttatcttattatctatatt |
250 |
Q |
| |
|
|||| ||||||||||||||||||| || |||||||||| |||||||||| ||||| |||||||||||| |
|
|
| T |
42631591 |
attgatattctatgaaactctaacagtttttgttagtctctttgttattctatctgattatctatatt |
42631524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 814396 - 814352
Alignment:
| Q |
174 |
tgttaagttattggtattctatgaaactctaactgtatttgttag |
218 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
814396 |
tgttaagctattggtattctatgaaactctagctgtctttgttag |
814352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 257
Target Start/End: Original strand, 17749814 - 17749880
Alignment:
| Q |
191 |
tctatgaaactctaactgtatttgttagtcactttgttattttatcttattatctatattgttaaca |
257 |
Q |
| |
|
|||||||||| |||| || |||||||||| |||| ||||| | ||| ||||||||||||||||||| |
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|
| T |
17749814 |
tctatgaaaccttaaccgtttttgttagtctctttattattctctctgattatctatattgttaaca |
17749880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 222 - 323
Target Start/End: Original strand, 24725780 - 24725881
Alignment:
| Q |
222 |
ctttgttattttatcttattatctatattgttaacatggtatccaaagcatgatttaatcctcattgaattgtttattgcttccgctattgagttcccaa |
321 |
Q |
| |
|
|||| ||||| ||||| ||||||||| ||||||||||| |||| | ||| | |||| ||| || |||||| ||||| ||||| ||||||| ||||||| |
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|
| T |
24725780 |
ctttattattctatctgattatctatgttgttaacatgatatcaagagcctaatttgatcgtccttgaatcatttataacttcctctattgaattcccaa |
24725879 |
T |
|
| Q |
322 |
aa |
323 |
Q |
| |
|
|| |
|
|
| T |
24725880 |
aa |
24725881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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