View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13313_low_2 (Length: 597)
Name: NF13313_low_2
Description: NF13313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13313_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 542; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 19 - 576
Target Start/End: Original strand, 183769 - 184326
Alignment:
| Q |
19 |
cataggacatgactgtgagattcttaacattatgcttaacacgaaggaaccgaattataacaagtatagttgatcatagttcatattactatgatggaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183769 |
cataggacatgactgtgagattcttaacattatgcttaacacgaaggaaccgaattataacaagtatagttgatcatagttcatattactatgatggaga |
183868 |
T |
|
| Q |
119 |
ggtcttcatttttactgtcattggaatttggaagggatgggaaactcccgtttagtctgagcttgaggggtcttcgacagaggagctgtattctattatt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183869 |
agtcttcatttttactgtcattggaatttggaagggatgggaaactcccgtttagtctgagcttgaggggtcttcgacagaggagctgtattctattatt |
183968 |
T |
|
| Q |
219 |
tagtgtgtttccagctaagtaatggttgtctaatttcagggatcgtatatacatgacaaagaaatcaaagctgtgatgggaatcaagattactgcccagg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183969 |
tagtgtgtttccagctaagtaatggttgtctaatttcagggatcgtatatacacgacaaagaaatcaaagctgtgatgggaatcaagattactgcccagg |
184068 |
T |
|
| Q |
319 |
tactttattgaattatgtttttcttcggttctatgtttatgaatgtgtagagaatcagagatttgataagatttcctgttattgtagggacttgaacatg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
184069 |
tactttattgaattatgtttttcttcggttctatgtttatgaatgtgtagagaatcagagatttgataagatttcctgttattgtagggacttgaacatg |
184168 |
T |
|
| Q |
419 |
ctattgctggctctagtttatatgtggtgaaacctgatgatgatttagaatattttaaaaaagcggccttggaagacgtggagtcggtcttgagcaggtt |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
184169 |
ctattgctggctctagtttatatgtggtgaagcctgatgatgatttagaatattttaaaaaagcggccttggaagacgtggagtcggtcttgagcaggtt |
184268 |
T |
|
| Q |
519 |
tgagaggagtggcgagagcatttatgttcaggctacaatgcctggctcattattgaaa |
576 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
184269 |
tgagaggagtggcgagagcatttatgttcaggctacaatacctggctcattattgaaa |
184326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 329 - 516
Target Start/End: Complemental strand, 590277 - 590090
Alignment:
| Q |
329 |
aattatgtttttcttcggttctatgtttatgaatgtgtagagaatcagagatttgataagatttcctgttattgtagggacttgaacatgctattgctgg |
428 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
590277 |
aattatgtttttctttatttttatgtttagaaatgtgtagagaatgagagatttgataagatttcctgttattgcagggacttgaacatgctattgctgg |
590178 |
T |
|
| Q |
429 |
ctctagtttatatgtggtgaaacctgatgatgatttagaatattttaaaaaagcggccttggaagacgtggagtcggtcttgagcagg |
516 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||| |||||| ||||| ||| |||| ||||||| |||||||| |||||||||||| |
|
|
| T |
590177 |
tgctagtttatatttggtgaagcctgatgatgatttggaatatgttaaacaagtggccatggaagatgtggagtcagtcttgagcagg |
590090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 227 - 321
Target Start/End: Complemental strand, 590414 - 590320
Alignment:
| Q |
227 |
ttccagctaagtaatggttgtctaatttcagggatcgtatatacatgacaaagaaatcaaagctgtgatgggaatcaagattactgcccaggtac |
321 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||| | ||| ||| ||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
590414 |
ttccagctaagtaatggttctcaaatttcagggatcatttatgcatcacaaagaaatcaaagctgtgatgggcgtcaagatcactgcccaggtac |
590320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 352 - 551
Target Start/End: Original strand, 44607247 - 44607446
Alignment:
| Q |
352 |
tgtttatgaatgtgtagagaatcagagatttgataagatttcctgttattgtagggacttgaacatgctattgctggctctagtttatatgtggtgaaac |
451 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||| |||||||| |||||||| |||||||||| | |
|
|
| T |
44607247 |
tgtttataaatgtgtagagaatctgagatttgataagatttcctgttatttcagggacttgaacacgctgttgctggcgctagtttacatgtggtgaagc |
44607346 |
T |
|
| Q |
452 |
ctgatgatgatttagaatattttaaaaaagcggccttggaagacgtggagtcggtcttgagcaggtttgagaggagtggcgagagcatttatgttcaggc |
551 |
Q |
| |
|
|| |||||||||| ||||| |||||||||| |||||||||||||||||||| |||||||||||| |||| |||||||| ||| || ||| ||| ||||| |
|
|
| T |
44607347 |
ctaatgatgatttgaaatatattaaaaaagcagccttggaagacgtggagtcagtcttgagcaggattgacaggagtggtgagggcgtttgtgtccaggc |
44607446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 352 - 551
Target Start/End: Original strand, 44628753 - 44628952
Alignment:
| Q |
352 |
tgtttatgaatgtgtagagaatcagagatttgataagatttcctgttattgtagggacttgaacatgctattgctggctctagtttatatgtggtgaaac |
451 |
Q |
| |
|
||||||| |||||||||||||||||| ||| ||| |||||||| |||| |||| |||||||||||||||||||| |||||||||||||||| || | |
|
|
| T |
44628753 |
tgtttataaatgtgtagagaatcagattttttatatgatttccttctatttcaggggcttgaacatgctattgctggagctagtttatatgtggtaaagc |
44628852 |
T |
|
| Q |
452 |
ctgatgatgatttagaatattttaaaaaagcggccttggaagacgtggagtcggtcttgagcaggtttgagaggagtggcgagagcatttatgttcaggc |
551 |
Q |
| |
|
||||||||||||| |||||| |||||||||| || |||||||||||||||||||||||||||||| |||| |||||||| ||| || ||| ||| ||||| |
|
|
| T |
44628853 |
ctgatgatgatttggaatatattaaaaaagcagctttggaagacgtggagtcggtcttgagcaggattgacaggagtggtgagggcgtttgtgtccaggc |
44628952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 182 - 323
Target Start/End: Original strand, 44628551 - 44628693
Alignment:
| Q |
182 |
tgaggggtcttcgacagaggagctgtattctattatttagtgtgt-ttccagctaagtaatggttgtctaatttcagggatcgtatatacatgacaaaga |
280 |
Q |
| |
|
||||||| ||| ||| ||||||||||||| | |||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
44628551 |
tgaggggcctttgacggaggagctgtattttgctatttagtatgtcttccagctaagtaatggttgtctaatttcagggatcgtatatccatcacaaaga |
44628650 |
T |
|
| Q |
281 |
aatcaaagctgtgatgggaatcaagattactgcccaggtactt |
323 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||||||||||| |
|
|
| T |
44628651 |
aatcaaagctgctatgggcatcaagatcactgcccaggtactt |
44628693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 228 - 323
Target Start/End: Original strand, 44607087 - 44607182
Alignment:
| Q |
228 |
tccagctaagtaatggttgtctaatttcagggatcgtatatacatgacaaagaaatcaaagctgtgatgggaatcaagattactgcccaggtactt |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||| ||||| |||||||| ||||||||||||||| |
|
|
| T |
44607087 |
tccagctaagtaatggttgtctaatttcagggatcatatatccatcacaaagaaatcaaagctgctatgggtatcaagatcactgcccaggtactt |
44607182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 44607003 - 44607073
Alignment:
| Q |
34 |
tgagattcttaacattatgcttaacacgaaggaaccgaattataacaagtatagttgatcatagttcatatt |
105 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| | || || | |||||||||| |||||||||||||| |
|
|
| T |
44607003 |
tgagattcttaacattatgcttaacaggaaggaaccaagttttagc-agtatagttgttcatagttcatatt |
44607073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 44628487 - 44628539
Alignment:
| Q |
53 |
cttaacacgaaggaaccgaattataacaagtatagttgatcatagttcatatt |
105 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||||||| |||||| ||||||| |
|
|
| T |
44628487 |
cttaacatgaaggaaccgagttatagcaagtatagttgttcatagctcatatt |
44628539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University