View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13313_low_3 (Length: 584)
Name: NF13313_low_3
Description: NF13313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13313_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 10 - 567
Target Start/End: Complemental strand, 44576649 - 44576098
Alignment:
| Q |
10 |
catcatcaaatgtaaacaagaaaactcgattttcttattccaccgtatttgaaaagaaaaacttacatatatatattattaataatatcattttcatttg |
109 |
Q |
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| T |
44576649 |
catcaacaaatgtaaacaagaaaactcgattttcttattccaccgtatttgaaaagaaaaacttacatatatat--tattaataatatcattttcatttg |
44576552 |
T |
|
| Q |
110 |
ttcatnnnnnnnnnnnnngatggatgaaggcatagttgagaaagctcttaacagcttaggaaaaggcttcgatttgacatcagatttcaggctcaaattc |
209 |
Q |
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| T |
44576551 |
ttcataaaaaccaaaaaagatggatgaaggcatagttgagaaagctcttaacagcttaggaaaaggcttcgatttgacatcagatttcaggctcaaattc |
44576452 |
T |
|
| Q |
210 |
tgcaaaggtgaagaacgtttgattcttctcaatgaaatagagaaaagagagctttctgtgccaggttttggatccataaaagatgtctccgttgacatca |
309 |
Q |
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| T |
44576451 |
tgcaaaggtgaagaacgtttgattcttctcaatgaaatagagaaaagagagctttctgtgccaggttttggatccataaaagatgtctccgttgacatca |
44576352 |
T |
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| Q |
310 |
aatgtgataaaggcgacaggacacgttatcaatccgacatcctcaccttcacccaagtaagctaaagctaattcactcatttcatatcaatcattatata |
409 |
Q |
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| T |
44576351 |
aatgtgataaaggcgacaggacacgttatcaatccgacatcctcaccttcacccaagtaagct-aagctaattcactcatttcatatcaatcattatata |
44576253 |
T |
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| Q |
410 |
tgtgatagactttactaacctttcaaccgatcgaattaacttgatgttaactcaacattttg-atgttagatgtcagagttattcaataggaagagttca |
508 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44576252 |
tgtgatagactttactaacctttcaaccgatcg----aacttgatgttaactcaacattttgaatgttagatgtcagagttattcaataggaagagttcg |
44576157 |
T |
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| Q |
509 |
atacctgggaaaattccaagtggatattttaatacagtatttgggtttgatgagggttc |
567 |
Q |
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| T |
44576156 |
atacctgggaaaattccaagtggatatttcaatacagtatttgggtttgatgagggttc |
44576098 |
T |
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