View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13313_low_5 (Length: 469)
Name: NF13313_low_5
Description: NF13313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13313_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 13 - 427
Target Start/End: Complemental strand, 49433285 - 49432871
Alignment:
| Q |
13 |
tggacatcatctagatttgattgttgatattcggaagaattgattattgttgaaattttgtgttactatgcttgcagcaaaaggtatttgtgcgaggagg |
112 |
Q |
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| T |
49433285 |
tggacattatatagatttgattgttgatattcggaagaattgattattgttgaaattttgtgttactatgcttgcagcaaaaggtatttgtgcgaggagg |
49433186 |
T |
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| Q |
113 |
gcagaaagaggaagagcctcttgagatggttgtgtacaaccaggggatgttcaagactgagctctgtaacaaatggcaggaaactggcacatgcccttat |
212 |
Q |
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| T |
49433185 |
gcagaaagaggaagagcctcttgagatggttgtgtacaaccaggggatgttcaagactgagctctgtaacaaatggcaggaaactggcacatgcccttat |
49433086 |
T |
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| Q |
213 |
ggagaccactgtcaattcgctcatggcattggggagcttcgcccagtgatccgccacccacgctacaaaactgaggtctgcaggatggtccttgctgggg |
312 |
Q |
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| T |
49433085 |
ggagaccactgtcaattcgctcatggcattggggagcttcgcccagtgatccgccacccacgctacaaaactgaggtctgcaggatggtccttgctgggg |
49432986 |
T |
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| Q |
313 |
ttgtgtgcccttatggccatagatgccatttccgtcatgcacttactgaacaagagaaagctatgtcacaacctaagcccagatcaatgaagctggaaag |
412 |
Q |
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| T |
49432985 |
ttgtgtgcccttatggccatagatgccatttccgtcatgcacttactgaacaagagaaagctatgtcacaacctaagcccagatcaatgaagctggaaag |
49432886 |
T |
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| Q |
413 |
atgaatggtctcatg |
427 |
Q |
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| T |
49432885 |
atgaatggtctcatg |
49432871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 3e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 195 - 378
Target Start/End: Complemental strand, 39170897 - 39170714
Alignment:
| Q |
195 |
actggcacatgcccttatggagaccactgtcaattcgctcatggcattggggagcttcgcccagtgatccgccacccacgctacaaaactgaggtctgca |
294 |
Q |
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| T |
39170897 |
actggcacatgcccttatggagaccactgtcaatttgctcacggcattggagagcttcgccaaatgatccgccatccacgctacaaaactgaggtctgca |
39170798 |
T |
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| Q |
295 |
ggatggtccttgctggggttgtgtgcccttatggccatagatgccatttccgtcatgcacttactgaacaagagaaagctatgt |
378 |
Q |
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| T |
39170797 |
ggatggtccttgctggggttgtgtgcccgtgtggccatagatgccatttccgtcatgcacttactgaacaagagaaagctatgt |
39170714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 39170934 - 39170894
Alignment:
| Q |
132 |
cttgagatggtt-gtgtacaaccaggggatgttcaagactg |
171 |
Q |
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| T |
39170934 |
cttgagatggtttgtgtacaaccaggggatgttcaagactg |
39170894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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