View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13313_low_6 (Length: 394)
Name: NF13313_low_6
Description: NF13313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13313_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 387
Target Start/End: Complemental strand, 30474488 - 30474120
Alignment:
| Q |
17 |
caaaacaagccaacaggtaactagatttcactattctgatcacacacacaacaccatagatgttattcattcaactttaaacaggcaagtaaaatcatat |
116 |
Q |
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| T |
30474488 |
caaaacaagacaacaggtaactagatttcactattctgatcacacacacaacaccatagatgttattcattcaactttaaacaggcaagtaaaatcatat |
30474389 |
T |
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| Q |
117 |
taaaataaaaggaacaaaagtttatcagcccatgagccaaaaaagtaaactagatgatcattgatcatcaaatgagtaaaatttgaagggacaaaaacac |
216 |
Q |
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| T |
30474388 |
taaaataaaaggaacaaaagtttatcagcccatgagccaaaaaagtaaacta--tgatcattgatcatcaaatgagtaaaatttgaagggacaaaaacac |
30474291 |
T |
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| Q |
217 |
ttacacgaatcaattcttttcgagcatccaacaactcatcattactctgacgctccttaatgattagtgtttggttcaaatcttttaagtcttcaattaa |
316 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| ||| |
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| T |
30474290 |
ttacacaaatcaattcttttcgagcatccaacaactcatcattactccgacgctccttaatgattagtgttaggttcaaatcatttaagtcttcaagtaa |
30474191 |
T |
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| Q |
317 |
ctcttctttgtcacttaaatccatccgcaaagcatctacctttttcaaaagatcctcatcttcttcatctc |
387 |
Q |
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| T |
30474190 |
ctcttctttgtcacttaaatccatccgcaaagcatctacctctttcaaaagatcctcatcttcttcatctc |
30474120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 217 - 358
Target Start/End: Complemental strand, 30466046 - 30465905
Alignment:
| Q |
217 |
ttacacgaatcaattcttttcgagcatccaacaactcatcattactctgacgctccttaatgattagtgtttggttcaaatcttttaagtcttcaattaa |
316 |
Q |
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| T |
30466046 |
ttacatgaatcaatatttttcgagcatattgcaactcatcattactcttatgctccttaatgattagtttttggttaaattcttctaactcttcaagtga |
30465947 |
T |
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| Q |
317 |
ctcttctttgtcacttaaatccatccgcaaagcatctacctt |
358 |
Q |
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| T |
30465946 |
ctcttctttgtctctcaaattcatcagcaaagcatctacctt |
30465905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 215 - 366
Target Start/End: Complemental strand, 30447249 - 30447098
Alignment:
| Q |
215 |
acttacacgaatcaattcttttcgagcatccaacaactcatcattactctgacgctccttaatgattagtgtttggttcaaatcttttaagtcttcaatt |
314 |
Q |
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|||||||| |||||||||||||||||||| || |||||| ||||||| ||||||||| ||||||||||||||||||| | | |||||||| || | |
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| T |
30447249 |
acttacactgatcaattcttttcgagcatcttgcagctcatcgttactcttacgctccttgatgattagtgtttggttcagtgcatctaagtcttgaagt |
30447150 |
T |
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| Q |
315 |
aactcttctttgtcacttaaatccatccgcaaagcatctacctttttcaaaa |
366 |
Q |
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||| ||| || || |||||| |||| ||||| |||||||||| ||||||| |
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| T |
30447149 |
gactgttccttctcccttaaacccatatgcaaatcatctaccttcttcaaaa |
30447098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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