View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13313_low_7 (Length: 312)
Name: NF13313_low_7
Description: NF13313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13313_low_7 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 44949707 - 44949423
Alignment:
| Q |
11 |
acagaggaatctcgtaaagagacatgaatagagaaataaaccttcctactactgtgttgaataaatccctaaaggcacttgtagaaaagtatagtatggt |
110 |
Q |
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| T |
44949707 |
acagaggaatctcgtaaagagacatgaatagagaaataaaccttcctactactgtgttgaataaatccctaaaggcacttgtagaaaagtatagtatggt |
44949608 |
T |
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| Q |
111 |
aaaggaagttcctaacattcaaaacaaagatataaagcactacatggcagcagaacttgagccttcagaggatatcactggtgggcatttttatagtgat |
210 |
Q |
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| T |
44949607 |
aaaggaagttcctaacattcaaaacgaagatataaagcactacatggcagcagaacttgagccttcagaggatatcactggtgggcatttttatagtgat |
44949508 |
T |
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| Q |
211 |
gggaagcttgatatgggttttatagatgctctaaagaaggtgtgcttgaaatgcattttcatgcataaagtttccacatgtgatg |
295 |
Q |
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| T |
44949507 |
gggaagcttgatacgggttttatagatgctctaaagaaggtgtgcttgaaatgcattttcatgcataaagtttccacatgtgatg |
44949423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 103 - 295
Target Start/End: Complemental strand, 6470464 - 6470272
Alignment:
| Q |
103 |
agtatggtaaaggaagttcctaacattcaaaacaaagatataaagcactacatggcagcagaacttgagccttcagaggatatcactggtgggcattttt |
202 |
Q |
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| T |
6470464 |
agtatggtaaaggaacttccttccattaaaaacaaaggtataaagatctacatgggaacagaatttgagccttcgaaggatataactggtgggcattttt |
6470365 |
T |
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| Q |
203 |
atagtgatgggaagcttgatatgggttttatagatgctctaaagaaggtgtgcttgaaatgcattttcatgcataaagtttccacatgtgatg |
295 |
Q |
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| T |
6470364 |
acagtgaagggagtcttgatacggtttttatagacgctctaaagcaaacgtgcctgcaatgcatttcattggagagagtttccacatgtgatg |
6470272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 195 - 291
Target Start/End: Complemental strand, 44943734 - 44943638
Alignment:
| Q |
195 |
gcatttttatagtgatgggaagcttgatatgggttttatagatgctctaaagaaggtgtgcttgaaatgcattttcatgcataaagtttccacatgt |
291 |
Q |
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| T |
44943734 |
gcatttttatggtgatgggaaacttgatacggttttgatagatactctaaagaatgtgtacttgaaatgcattttcatgcagaaagtttccacatgt |
44943638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 44943804 - 44943742
Alignment:
| Q |
85 |
gcacttgtagaaaagtatagtatggtaaaggaagttcctaacattcaaaacaaagatataaag |
147 |
Q |
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| T |
44943804 |
gcacttgtagaaaagtatagtatggtaaaggaagttcctaacattcaaaacaaaggtataaag |
44943742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 103 - 295
Target Start/End: Original strand, 419220 - 419412
Alignment:
| Q |
103 |
agtatggtaaaggaagttcctaacattcaaaacaaagatataaagcactacatggcagcagaacttgagccttcagaggatatcactggtgggcattttt |
202 |
Q |
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| T |
419220 |
agtatggtaaaggaacttccttccattaaaaacaaaggtataaagatctacatgggaacagaatttgagccttcgaaggatataactggtgggcattttt |
419319 |
T |
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| Q |
203 |
atagtgatgggaagcttgatatgggttttatagatgctctaaagaaggtgtgcttgaaatgcattttcatgcataaagtttccacatgtgatg |
295 |
Q |
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| T |
419320 |
acagcgaagggagtcttgatacggtttttatagatgctctaaagaaaacgtgcttgcaatgcatttcattacagagagtttccacatgtgatg |
419412 |
T |
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