View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13313_low_9 (Length: 244)
Name: NF13313_low_9
Description: NF13313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13313_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 4631599 - 4631816
Alignment:
| Q |
18 |
cgttggagttttcaatgtgttgatacgaatacgatgttgggtaaaaatagaggcgaagaaaaatagggccattggtgatggaagaaaaggagaatgtgaa |
117 |
Q |
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| T |
4631599 |
cgttggaggtttcaatgtgttgatacgaatacgatgttggataaaaatagaggcgaagaaaaatagggccattggtgatggaagaaaaggagaatgtgaa |
4631698 |
T |
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| Q |
118 |
attcgaaaaagaaatacgtgcagaggcgaagggaattcgcttaacagcatcagagttaggattagctttggctttgaaagacgggagttcggtttgtggt |
217 |
Q |
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| T |
4631699 |
attcgaaaaagaaatacgtgcagaggcgaagggaattcgcttaacagcatcagagttaggattagctttggctttgaaagacgggagttcggtttgtggt |
4631798 |
T |
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| Q |
218 |
tcaatgatagagaataat |
235 |
Q |
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|||||||||||||||||| |
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| T |
4631799 |
tcaatgatagagaataat |
4631816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 192
Target Start/End: Original strand, 4667629 - 4667775
Alignment:
| Q |
46 |
atacgatgttgggtaaaaatagaggcgaagaaaaatagggccattggtgatggaagaaaaggagaatgtgaaattcgaaaaagaaatacgtgcagaggcg |
145 |
Q |
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| T |
4667629 |
atacgatgttgggtaaaaatggaggcgaagaaaaacagggccactattgatcggagaaaatgagaatgtgaaatcggaaaatgatatacgtgcagaggaa |
4667728 |
T |
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| Q |
146 |
aagggaattcgcttaacagcatcagagttaggattagctttggcttt |
192 |
Q |
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| T |
4667729 |
aatggaatatgattaacagaatcagagttaggattagctttggcttt |
4667775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 233
Target Start/End: Complemental strand, 18925149 - 18924962
Alignment:
| Q |
46 |
atacgatgttgggtaaaaatagaggcgaagaaaaatagggccattggtgatggaagaaaaggagaatgtgaaattcgaaaaagaaatacgtgcagaggcg |
145 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| ||| | || ||||| ||| ||||||||||| || ||||| ||||||||||| ||||| |
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| T |
18925149 |
atacgatgttgggtaaaaatgaaggcgaagaaaaatagggctattagcgacggaaggaaatgagaatgtgaagttggaaaatgaaatacgtgctgaggca |
18925050 |
T |
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| Q |
146 |
aagggaattcgcttaacagcatcagagttaggattagctttggctttgaaagacgggagttcggtttgtggttcaatgatagagaata |
233 |
Q |
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|| |||||| | ||||||| |||||||||||| || | ||||| ||||| ||| | | ||| || |||||||||||||||||||||| |
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| T |
18925049 |
aacggaatttggttaacagaatcagagttagggttgggtttggatttgatagatgaaaattcagtctgtggttcaatgatagagaata |
18924962 |
T |
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