View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13314_high_12 (Length: 461)
Name: NF13314_high_12
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 25790461 - 25790846
Alignment:
| Q |
18 |
gtatctgcttgaataggatatttaatcaaatttcttaaatatttatattttttgcaaaattggaggaccaaaaagttaacaaatggccttgtcttcttct |
117 |
Q |
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| T |
25790461 |
gtatctgcttgaataggatatttaatcaaatttcttaaatatttttattttttgcaaaattggaggaccaaaaagttaacaaatggccttgtcttcttct |
25790560 |
T |
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| Q |
118 |
ttattgctttctgtagtggcagtattcattttgttgttttgctagatattatttttctgaagggcaatatgccaagtataaaaggtagttgcaaggaatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| |||| |
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| T |
25790561 |
ttattgctttctgtagtggcagtattcattttgttgttttgctagatattatttttctgaagggcaatatgccatgtataaaaggtggctgcaagaaatt |
25790660 |
T |
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| Q |
218 |
gaaagatacctgctctggaaaaatgaggaactggaagggttggaggtgtttcaagagtcttactatctacccttttaagagtttactttgtaaagtgagt |
317 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25790661 |
gaaagatacctgatctggaaaaatgaggaactggaagggttggaggtgtttcaagagtcttactatctacccttttaagagtttactttgtaaagtgagt |
25790760 |
T |
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| Q |
318 |
tcaaatttcaggctcaaatctcaaggtaagtaacaaactgcttataattccattgttgttacaaaaatatgtggaatatgtatgca |
403 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
25790761 |
tcaaatttcaggctcaaatctcaaggtaagtaacaagctgcttataattccattgttgctacaaaaatatgtggaatatgcatgca |
25790846 |
T |
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