View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13314_high_24 (Length: 371)
Name: NF13314_high_24
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_high_24 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 22 - 371
Target Start/End: Original strand, 33456096 - 33456448
Alignment:
| Q |
22 |
gatgtcaaacattaatgctgagtcagcagctgccatgcagctttttctcatgaacccgcaaaccaccagatccccatcacctccacctcaacctcatcct |
121 |
Q |
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| T |
33456096 |
gatgtcaaacattaatgctgagtcagcagctgccatgcagctttttctcatgaacccgcaaaccaccagatccccatcacctccacctcaacctcatcct |
33456195 |
T |
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| Q |
122 |
tcatctactaattcttccactctccacatgttacttcccaatccttcaactactaatctccaaggttataattccggagccggagggtctttcggtcaat |
221 |
Q |
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| T |
33456196 |
tcatctactaattcttccactctccacatgttacttcccaatccttcaacaactaatctccaaggttataattccggagccggagggtcttttggacaat |
33456295 |
T |
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| Q |
222 |
tcacatgggctcaaga---aggaggaggaggagcaacatcaagtcatcaccaactcaacaacaaccaaccagaaatggcaagtgttgttgaaggacaagg |
318 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33456296 |
tcacatgggctcaagaaggaggaggaggaggagcaacatcaagtcatcaccaactcaacaacaaccaaccagaaatggcaagtgttgttgaaggacaagg |
33456395 |
T |
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| Q |
319 |
cctttcgttgtcgttatcgtcttcgttacaacatcatcattcagaggatttaa |
371 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33456396 |
tctttcgttgtcgttatcgtcttccttacaacatcatcattcagaggatttaa |
33456448 |
T |
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