View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13314_high_25 (Length: 357)
Name: NF13314_high_25
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 39691220 - 39691017
Alignment:
| Q |
1 |
caactaagaatgagccaaagaaagagtcagcaaggattgctgcaacaagtggaaatagacttgtgcttccaacaacaacgtttacaatctgagctgcatt |
100 |
Q |
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| T |
39691220 |
caactaagaatgagccaaagaaagagtcagcaaggattgctgcaacaagtggaaatagacttgtgcttccaacaacaacgtttacaatctgagctgcatt |
39691121 |
T |
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| Q |
101 |
gatgctcttgatattgaattcacttataagatatacaatcaagtttccaacaattccagtgcttgcaagtgacaaccccgttatcatacctataattaat |
200 |
Q |
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| T |
39691120 |
gatgctcttgatattgaattcacttataagatatacaatcaagtttccaacaattccagtgcttgcaagtgacaaccccgttatcatacctataattaat |
39691021 |
T |
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| Q |
201 |
caac |
204 |
Q |
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|||| |
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| T |
39691020 |
caac |
39691017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 7 - 197
Target Start/End: Complemental strand, 39700403 - 39700213
Alignment:
| Q |
7 |
agaatgagccaaagaaagagtcagcaaggattgctgcaacaagtggaaatagacttgtgcttccaacaacaacgtttacaatctgagctgcattgatgct |
106 |
Q |
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| T |
39700403 |
agaaagagccaaagaaagaatcagcaaggattgcagcaatgattggtaatagattggagcttccaacaacaacgtttacaatttgagctgcattgatgct |
39700304 |
T |
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| Q |
107 |
cttgatattgaattcacttataagatatacaatcaagtttccaacaattccagtgcttgcaagtgacaaccccgttatcatacctataatt |
197 |
Q |
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| T |
39700303 |
ctttatattgaattcttttataagatatacaatcaaattccccccaattcctgcacttgctagtgacaaccccgctaccatacctataatt |
39700213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 39931011 - 39931190
Alignment:
| Q |
15 |
ccaaagaaagagtcagcaaggattgctgcaacaagtggaaatagacttgtgcttccaacaacaacgtttacaatctgagctgcattgatgctcttgatat |
114 |
Q |
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| T |
39931011 |
ccaaagaaagaatcagcaacgattgcggccactactggaaatatactggtgcttccaacgacaacatttgaaatttgagttgcagtgatgctctttatat |
39931110 |
T |
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| Q |
115 |
tgaattcacttataagatatacaatcaagtttccaacaattccagtgcttgcaagtgacaaccccgttatcatacctata |
194 |
Q |
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| T |
39931111 |
tgaattctcttgtaagatatacaatcaagtttccaacaattccggtgcttccaagtgacatccccgctatcatacctata |
39931190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 240 - 338
Target Start/End: Complemental strand, 39690981 - 39690883
Alignment:
| Q |
240 |
ttgacatgcttttgatatcaagtgattgagctcaagaatgagctcattgagcaacaaatagttcaggagatcgatctgaattcatattctgacggaaac |
338 |
Q |
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| T |
39690981 |
ttgacatgctttttatatcaagtgattcagctcaagaatgagctcattgagcgacaaatagttcaggagatcgatctgaattcatattctgacggaaac |
39690883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 64 - 138
Target Start/End: Original strand, 39935317 - 39935391
Alignment:
| Q |
64 |
tgcttccaacaacaacgtttacaatctgagctgcattgatgctcttgatattgaattcacttataagatatacaa |
138 |
Q |
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| T |
39935317 |
tgcttccgataacaatgtttacaatctgagcagcaatgatgctctttatattgaattcttgtataagatatacaa |
39935391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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