View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13314_high_27 (Length: 339)
Name: NF13314_high_27
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_high_27 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 39395624 - 39395962
Alignment:
| Q |
1 |
taagcagcaacacaaaggggggaataatgaagaggttgttaataaagaaattattgtagaagatgatacactaaagggttcaatatttgatgaagtggag |
100 |
Q |
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| T |
39395624 |
taagcagcaacacaaaggggggaataatgaagaggttgttaataaagaaattattgtagaagatgatacactaaagggttcaatatttgatgaagtggag |
39395723 |
T |
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| Q |
101 |
gacgattcacctgattcagaaacacatgttgaaatgggaattcatgatgactttgatcatttagatgaatcacattttgatgattctgaggctgatagaa |
200 |
Q |
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| T |
39395724 |
gacgattcacctgattcagaaacacatgttgaaatgggaattcatgaagattttgatcatttagatgaatcacattttgatgattctgaggctgatagaa |
39395823 |
T |
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| Q |
201 |
acaacagaaaaagtaaagcattgctgagaagatttggtgatcttataaggagaaaaagnnnnnnnnnnnnnnnnnataataatacccgaaaagaacttcc |
300 |
Q |
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| T |
39395824 |
acaacagaaaaagtaaagcattgctgagaagatttggtgatcttataaggagaaaaagtactactactgctactaataataatacccgaaaagaacttcc |
39395923 |
T |
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| Q |
301 |
caatgaagaacatctacaaacgtaatgcaaattacacag |
339 |
Q |
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| T |
39395924 |
caatgaagaacatctacaaacgtaatgcaaattacacag |
39395962 |
T |
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