View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13314_high_29 (Length: 318)

Name: NF13314_high_29
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13314_high_29
NF13314_high_29
[»] chr4 (1 HSPs)
chr4 (1-288)||(30108822-30109102)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 30109102 - 30108822
Alignment:
Q  1 tgccttcacgagtaaatctttcactttagtaccataatagaaccattttgttgacaaatttaaagtccaacacatttcaaacatgaaaatgtttatccca 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30109102 tgccttcacgagtaaatctttcactttagtaccatattagaaccattttgttgacaaatttaaagtccaacacatttcaaacatgaaaatgtttatccca 30109003  T
Q  101 caaaatgcatcacatggaaggctcaacaatgagata--------attacttgaattactattaaagaaatgtttgtctcaactcaagcaatgaaatgcca 192  Q
    ||||||||||||||||||||||||||||||||||||        ||||||| ||||||||||||||||||||||||     |||||||||||||||||||    
T  30109002 caaaatgcatcacatggaaggctcaacaatgagataattatccaattacttcaattactattaaagaaatgtttgt-----ctcaagcaatgaaatgcca 30108908  T
Q  193 accaaaattgtgtatttgttattttgtttcaaattcccttactatgccttatccgaaatcaaatcccttattttatattgtccattttagcttcac 288  Q
    ||||||||||||||||||||||||| |||| |||||          ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30108907 accaaaattgtgtatttgttattttctttcgaattc----------ccttatccgaaatcaaatctcttattttatattgtccattttagcttcac 30108822  T

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