View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13314_high_3 (Length: 739)
Name: NF13314_high_3
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 42665327 - 42664902
Alignment:
| Q |
1 |
tcatcatattcataactgcaacaaccacttttttcctttcaaaaatatagctttcccacttttagcaagtaattaaattcaattgttggccaatataaat |
100 |
Q |
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| T |
42665327 |
tcatcatattcataaatgcaacaaccacttttttcctttcaaaaatatagctttcccacttttagcaagtaattaaattcaattgttggccaatataaat |
42665228 |
T |
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| Q |
101 |
acattgtaaaaaacatcataacaacataattaataccctctcattttaattcagctcaaagttacaatccattaacaagttttgtatttaattaaaaata |
200 |
Q |
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| T |
42665227 |
acattgtaaaaaacatcataacaacataattaataccctctcattttaattcagctcaaagttacaatccattaacaagtattgtatttaattaaaaata |
42665128 |
T |
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| Q |
201 |
atggtcaacataaaaaacaattattttacagtaaagtcaaactaaccaatacaattgaaaaatagtaccaaaacaaaagtgcatcttatgttacctgatc |
300 |
Q |
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| T |
42665127 |
atggtcaacataaaaaacaattattttacaataaagtcaaactaaccaatacaattgaaaaatagtaccaaaacaaaagtgcatcttatgttacctgatc |
42665028 |
T |
|
| Q |
301 |
tgatcctgagaacaaggaagccaaaacatgaagctgtttcctactgacattgtaacgttgtaacaaggtttgtgcactcttttcacaagctgtttcttta |
400 |
Q |
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| T |
42665027 |
tgatcctgagaacaaggaagccaaaacatgaagctgtttcttactgacattgtaacgttgtaacaaggtttgtgcactcttttcacaagctgtttcttta |
42664928 |
T |
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| Q |
401 |
atcaaatgcttaaagttgaaggtact |
426 |
Q |
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| T |
42664927 |
atcaaatgcttaaagttgaaggtact |
42664902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 493 - 724
Target Start/End: Complemental strand, 42664835 - 42664625
Alignment:
| Q |
493 |
tttcctcctacatgttgtactagaattagacacatgcaaagactcatttcctttccaagacttgatttttggtgaagaacatcttccatttgaacaagaa |
592 |
Q |
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| T |
42664835 |
tttcctcctacatgttgtactagaattagacacatgcaaagactcatttcctttccaagacttgatttttggtgaagaacatct---------------- |
42664752 |
T |
|
| Q |
593 |
actcttccattcacaatcacagacatccttgaaaaatttaccaacttttcttcactgaaagttcaagttaaaaaacactactttagcagaacattcataa |
692 |
Q |
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| T |
42664751 |
-----tccattcacaatcacagacatccttgaaaaatttaccaacttttcttcactgaaagttcaagttaaaaaacactactttagcagaacattcataa |
42664657 |
T |
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| Q |
693 |
aactgaactaccaaacaccaaaacatgaatct |
724 |
Q |
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| T |
42664656 |
aactgaactaccaaacaccaaaacatgaatct |
42664625 |
T |
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Back To:
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