View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13314_high_39 (Length: 255)

Name: NF13314_high_39
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13314_high_39
NF13314_high_39
[»] chr3 (10 HSPs)
chr3 (12-241)||(50302045-50302274)
chr3 (54-143)||(6935166-6935258)
chr3 (169-238)||(6531305-6531374)
chr3 (90-143)||(6525439-6525492)
chr3 (90-143)||(6799225-6799278)
chr3 (201-238)||(6941120-6941157)
chr3 (201-238)||(6944340-6944377)
chr3 (90-143)||(6410639-6410692)
chr3 (1-38)||(32862257-32862294)
chr3 (193-241)||(6799341-6799389)
[»] chr8 (1 HSPs)
chr8 (1-37)||(42476348-42476384)
[»] chr2 (2 HSPs)
chr2 (5-37)||(23757932-23757964)
chr2 (1-37)||(33522557-33522593)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 50302045 - 50302274
Alignment:
Q  12 ctcttcttctctgattctcactcaattaacaagggtaattttggtaaattactccctttgtgcatgtttgggttccgtgtgaatttgattgaattgtggc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50302045 ctcttcttctctgattctcactcaattaacaagggtaattttggtaaattactccctttgtgcatgtttgggttccgtgtgaatttgattgaattgtggc 50302144  T
Q  112 aattttgtcaaaatttatatttttgaacttcagagttgtcatcaatagcattgtattgaggattgatcaactaattcagagttgtcatgttcccttattt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  50302145 aattttgtcaaaatttatatttttgaacttcagagttgtcatcaatagcattgtattgaggattgatcaactaattcacagttgtcatgttcccttattt 50302244  T
Q  212 ttgtatgtgtttttcttcccaccttttgat 241  Q
    ||||||||||||||||||||| ||||||||    
T  50302245 ttgtatgtgtttttcttcccagcttttgat 50302274  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 6935258 - 6935166
Alignment:
Q  54 ggtaaattactccctttgtgcatgtt---tgggttccgtgtgaatttgattgaattgtggcaattttgtcaaaatttatatttttgaacttca 143  Q
    ||||||| ||||||| ||||||||||   ||| ||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  6935258 ggtaaatcactccctatgtgcatgttgtttggattccgggtgaatttgatagaattgtggcaattttgtccaaatttatatttttgaacttca 6935166  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 6531305 - 6531374
Alignment:
Q  169 gaggattgatcaactaattcagagttgtcatgttcccttatttttgtatgtgtttttcttcccacctttt 238  Q
    |||||||||| || | ||||| |  |||||| ||||||||||||||||||||||||||||||||||||||    
T  6531305 gaggattgattaatttattcataactgtcatcttcccttatttttgtatgtgtttttcttcccacctttt 6531374  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 6525439 - 6525492
Alignment:
Q  90 gtgaatttgattgaattgtggcaattttgtcaaaatttatatttttgaacttca 143  Q
    ||||||||||| |||| |||| ||||||||||||||||||| ||||||||||||    
T  6525439 gtgaatttgatagaatcgtggtaattttgtcaaaatttatacttttgaacttca 6525492  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 6799225 - 6799278
Alignment:
Q  90 gtgaatttgattgaattgtggcaattttgtcaaaatttatatttttgaacttca 143  Q
    ||||||||||| ||||||||| |||||||||||||||| || ||||||||||||    
T  6799225 gtgaatttgatagaattgtggtaattttgtcaaaatttgtacttttgaacttca 6799278  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 6941157 - 6941120
Alignment:
Q  201 ttcccttatttttgtatgtgtttttcttcccacctttt 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6941157 ttcccttatttttgtatgtgtttttcttcccacctttt 6941120  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 6944377 - 6944340
Alignment:
Q  201 ttcccttatttttgtatgtgtttttcttcccacctttt 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6944377 ttcccttatttttgtatgtgtttttcttcccacctttt 6944340  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 6410639 - 6410692
Alignment:
Q  90 gtgaatttgattgaattgtggcaattttgtcaaaatttatatttttgaacttca 143  Q
    ||||||||||| ||||||||  ||||||||||||||||||| ||||||| ||||    
T  6410639 gtgaatttgatagaattgtgataattttgtcaaaatttatacttttgaatttca 6410692  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 32862257 - 32862294
Alignment:
Q  1 atccaatccaactcttcttctctgattctcactcaatt 38  Q
    ||||||| || |||||||||||||||||||||||||||    
T  32862257 atccaattcacctcttcttctctgattctcactcaatt 32862294  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 6799341 - 6799389
Alignment:
Q  193 ttgtcatgttcccttatttttgtatgtgtttttcttcccaccttttgat 241  Q
    ||||||| |||| |||||||||||||||||| ||||||||  |||||||    
T  6799341 ttgtcatattccgttatttttgtatgtgtttctcttcccatattttgat 6799389  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 42476384 - 42476348
Alignment:
Q  1 atccaatccaactcttcttctctgattctcactcaat 37  Q
    ||||||| || ||||||||||||||||||||||||||    
T  42476384 atccaattcacctcttcttctctgattctcactcaat 42476348  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 23757932 - 23757964
Alignment:
Q  5 aatccaactcttcttctctgattctcactcaat 37  Q
    |||||| ||||||||||||||||||||||||||    
T  23757932 aatccacctcttcttctctgattctcactcaat 23757964  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33522557 - 33522593
Alignment:
Q  1 atccaatccaactcttcttctctgattctcactcaat 37  Q
    ||||||| || ||||||||||||||||||||||||||    
T  33522557 atccaattcacctcttcttctctgattctcactcaat 33522593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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