View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13314_high_40 (Length: 255)
Name: NF13314_high_40
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_high_40 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] scaffold0154 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 255
Target Start/End: Complemental strand, 30109512 - 30109259
Alignment:
| Q |
10 |
aacaatatgccaatgattacggttgattacttggaacacaatccacacttgttgttacatatccgcaagtagctttaattttgttgacaaagtgt----- |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30109512 |
aacaatatgccaatgattacggttgattacttggaacacaatccacacttgttgttacatatccgcaagtagctttaattttgttgacaaagtgttattg |
30109413 |
T |
|
| Q |
105 |
---aatggtttagtttggggtttaaacttgttatgaactatatgtaaaattgggtcaatggttgtacttgtaaaaggggtttatgagtttatttgagacc |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30109412 |
tgtaatggtttagtttggggtttaaacttgttatgaactatatgtaaaattgggtcaatggttatacttgtaaaaggggtttatgagtttatttgagacc |
30109313 |
T |
|
| Q |
202 |
accattatgtaatatgaagatgttatgtatcgctgcttgaaagctagctagcta |
255 |
Q |
| |
|
|| |||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
30109312 |
actgttatgtaatatgaaaatgttatgcatcgctgcttgaaagctagctagcta |
30109259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 55207412 - 55207480
Alignment:
| Q |
144 |
tgtaaaattgggtcaatggttgtacttgtaaaaggggtttatgagtttatttgagaccaccattatgtaat |
214 |
Q |
| |
|
||||||||| |||||| |||||||||||| |||||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
55207412 |
tgtaaaattaggtcaacggttgtacttgt-aaaggggtttataagtttatttga-accactgttatgtaat |
55207480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 52166157 - 52166104
Alignment:
| Q |
144 |
tgtaaaattgggtcaatggttgtacttgtaaaaggggtttatgagtttatttga |
197 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
52166157 |
tgtaaaattgggtcaatggttgtatttgtaaaaggggtttatgagtttatttga |
52166104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 10146 - 10093
Alignment:
| Q |
144 |
tgtaaaattgggtcaatggttgtacttgtaaaaggggtttatgagtttatttga |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
10146 |
tgtaaaattgggtcaatggttgtacttgtaaaaagggtttatgagtttagttga |
10093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University