View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13314_low_1 (Length: 1045)
Name: NF13314_low_1
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 608 - 1038
Target Start/End: Complemental strand, 38039985 - 38039555
Alignment:
| Q |
608 |
aaatagttaaggattacaaacacaaacaccgttatcattacatcataaaaattgaaattggccctgtcaagataaagtatgaaggttgatgaggttagcg |
707 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38039985 |
aaatagttaaggattacacacacaaacaccgttatcattacatcataaaaattgaaattggccctgtcaagataaagtatgaaggttgatgaggttagcg |
38039886 |
T |
|
| Q |
708 |
ttgaagaaacccagcaaagttgctttttgaagcaaaaccattaataaagagaatataagattgctttagattaacatggggtactaaacatcgtcctgct |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38039885 |
ttgaagaaacccagcaaagttgctttttgaagcaaagccattaataaagagaatataagattgctttagattaacatggggtactaaacatcgtcctgct |
38039786 |
T |
|
| Q |
808 |
ttattctttttcccttgcttctttgaaatcctcatcatgtgtcttggtggtgatgttagattctcttcacacaattcaggttcttcaatgatagtagaaa |
907 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38039785 |
ttattctttttcccttgcttctttgaaatcctcatcatgtgtcttggtggtgatgttagattctcttcacacaattcaggttcttcaatgatagtagaaa |
38039686 |
T |
|
| Q |
908 |
gcttagaccttagaatttcctccatgtccttcctagactcatttctcctgctagtgcaaggcactgaccttaatattttcctgcatgccctcctcatttc |
1007 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38039685 |
gcttagcccttagaatttcctccatgtccttcctagactcatttctcctgctcgtgcaaggcactgaccttaatattttcctgcatgccctcctcatttc |
38039586 |
T |
|
| Q |
1008 |
ttttgcttctgatttcaatctttacatttgc |
1038 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
38039585 |
ttttgcttctgatttcaatctttacatttgc |
38039555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 319; Significance: 1e-179; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 15936039 - 15935689
Alignment:
| Q |
1 |
acagtagggttaaatactcatactcaaatatcacgtaacctaacctaacctgcctgctaaacaaacacaaacagatacaggatggcttccggctccggca |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15936039 |
acagtagggttaaatactcatactaaaatatcacgtaacttaacctaacctgcctgctaaacaaacacaaacagatacaggatggcttccggctccggca |
15935940 |
T |
|
| Q |
101 |
acgtcgtggacgaaaagttcgacccactcattcggcaagtggccatcagattggcaaacaaggtcccttacctccccaaatttgtgatatctcgtctccc |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | |
|
|
| T |
15935939 |
acgtcgtggacgaaaagttcgacccgctcattcggcaagtggccatcagattggcaaacaaggtctcttacctccccaaatttgtaatatctcgtctctc |
15935840 |
T |
|
| Q |
201 |
cgacgatgaattatacgagctcctcggcaaaaagctttctaacctcaacgaaggcgaagcagatcgcatcctcgaagcggagttacaaaccatgttcgct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15935839 |
cgacgatgaattatacgagctcctcggcaaaaagctttctaacctccccgaaggcgaagcagatcgcatcctcgaagcggagttacaaaccatgttcgct |
15935740 |
T |
|
| Q |
301 |
cctttgggagccgttctatctttccttttccctcgtacaaatcgaattact |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15935739 |
cctttgggagccgttctatctttccttttccctcgtacaaatcgaattact |
15935689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 473 - 582
Target Start/End: Complemental strand, 15935563 - 15935454
Alignment:
| Q |
473 |
atgctattgctcatcacatcccttatttgtttctttctaattgttttaggtatcctttacgctggttccgttggattcatatattatggtggcttgcagg |
572 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15935563 |
atgctattgctcatcacaacccttatttgtttctttctaattgttttaggtatcctttacgctggttccgttggattcatatattatggtggcttccagg |
15935464 |
T |
|
| Q |
573 |
tatgtaatgt |
582 |
Q |
| |
|
|||||||||| |
|
|
| T |
15935463 |
tatgtaatgt |
15935454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 380 - 453
Target Start/End: Complemental strand, 15935660 - 15935587
Alignment:
| Q |
380 |
aaatactcgagcccgtttctttgaaggattttattatttacagtttgtactcttactctttcttcttcatccca |
453 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
15935660 |
aaatactcgagccagttgctttgaaggattttattatttacagtttgtacttttactctttcttctgcatccca |
15935587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University