View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13314_low_10 (Length: 483)
Name: NF13314_low_10
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Original strand, 12157742 - 12158153
Alignment:
| Q |
18 |
gtaaattcatggaatgatgaaatgcatggttgaatattcaacatgcatgtgaaaacacaaatatactgtcaatatcaatatacgtgtgaaaacaaaaatc |
117 |
Q |
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| T |
12157742 |
gtaaattcatgaaatgatgaaatgcatggttgaatattcaacatgcatgtgaaaacacaaatatactgtcaatatcaatagacgtgtgaaaacaaaaatc |
12157841 |
T |
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| Q |
118 |
taatacgatcaaaatatcaacatacatgtttaaactttgtagtaccctcaactgcctctataataaattcaagtaaaaagatatttatgtgccttgaacc |
217 |
Q |
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| T |
12157842 |
taatacgatcaaaatatcatcatacatgtttaaactttgtagtatccttgactgcctctgtaataaattcaagtgaaaagatatttatgagcctggaacc |
12157941 |
T |
|
| Q |
218 |
ataaccactacctttgagatcataaacgccatctccataatccaccataggaacaccgcctcccttaatataaactgataccttactcactttggcatta |
317 |
Q |
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| T |
12157942 |
ataaccactacctttgagatcataaacgccatctccattatccaccatagggacaccgcctcccttaatgtaaattgataccttactcactttggcatca |
12158041 |
T |
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| Q |
318 |
atatcaactttcacacattccatcaatgatggatttctcttataacaatcaaagatgttaacgaaaattttgtgaagtcctgatacaaaataaattgaac |
417 |
Q |
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| T |
12158042 |
atatcaactttcacacattccatcaatgatggatttctcttataacaatcaaagatgttaaccataattttatgaagtcctggtacaaaataaattgaac |
12158141 |
T |
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| Q |
418 |
gcagaaccattc |
429 |
Q |
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| T |
12158142 |
gcagaaccattc |
12158153 |
T |
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