View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13314_low_11 (Length: 481)
Name: NF13314_low_11
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 14 - 464
Target Start/End: Complemental strand, 3804376 - 3803927
Alignment:
| Q |
14 |
atcataagaagaagaatagtggaggtggttttcctgtgcttccggttcacaaaaatggtgcagaaaacagggatatgatagtcaaaaattatcatcctac |
113 |
Q |
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| T |
3804376 |
atcataagaagaagaatagtggaggtggttttcctgggattccggttcacaaaaatggtgaagaaacaacggttatgatagaaaaacattatattcctac |
3804277 |
T |
|
| Q |
114 |
caaatattcgtatatgtccctttcctttaatattcattcttttaatatgcactttatccttcattatgtgcatttatttctagttattctactttaagac |
213 |
Q |
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||||||||||||| | || |||| |||| |||||| |||||| |||||||| ||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3804276 |
caaatattcgtatgtttcactttgctttcatattccttcttt-aatatgcattttcttcttcattatgtgcatttatttctagttattctactttaagac |
3804178 |
T |
|
| Q |
214 |
tgatgcatgcatgattgttcattcattaatcaacttgttggtacagtcgagataagttgctggctttcttggaggaacattgcatgcttgaaaatgctat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3804177 |
tgatgcatgcatgattgttcattcattaatcaacttgttggtacagtcgagataagttgctggctttcttggaggaacattgcatgtttgaaaatgctat |
3804078 |
T |
|
| Q |
314 |
agatcaatccaatggtgaagaaagtacttttgctttcgatttcttttatttacctattgatttcaagtacactgccaaaataacttcaatcgctggaann |
413 |
Q |
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| T |
3804077 |
agatcaatccaatggtgaagaaagtacttttgctttcgatttcctttatttacctattgatttcaagtacactgccaaaataacttcaatcactggaatt |
3803978 |
T |
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| Q |
414 |
nnnnnnngtgtgtgtgaattgttgatgtgttcatacactgctaattgtgac |
464 |
Q |
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| T |
3803977 |
tttttttgtgtgtgtgaattgttgatgtgttcatacactgctaattgtgac |
3803927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 206 - 464
Target Start/End: Original strand, 26913774 - 26914023
Alignment:
| Q |
206 |
tttaagactgatgcatgcatgattgttcattcattaatcaacttgttggtacagtcgagataagttgctggctttcttggaggaacattgcatgcttgaa |
305 |
Q |
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||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||| |||| |
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| T |
26913774 |
tttaagacttatgcatgcatgattgttcatttattaatcaacttgttggtacagtcgagataagttgttggatttcttggaggagttttgcatgcgtgaa |
26913873 |
T |
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| Q |
306 |
aatgctatagatcaatccaatggtgaagaaagtacttttgctttcgatttcttttatttacctattgatttcaagtacactgccaaaataacttcaatcg |
405 |
Q |
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| T |
26913874 |
aatgccaaagatcaagccaatggtgaagaaagtacttttgcttttaatgccgtatacttgcctattgatttttggtacactgcc-aaataacttcaatca |
26913972 |
T |
|
| Q |
406 |
ctggaannnnnnnnngtgtgtgtgaattgttgatgtgttcatacactgctaattgtgac |
464 |
Q |
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| T |
26913973 |
ctagaatt--------tgtgtgtaaaatgtggatttgttcatacactgctaattgtgac |
26914023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 26913712 - 26913751
Alignment:
| Q |
170 |
tccttcattatgtgcatttatttctagttattctacttta |
209 |
Q |
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| T |
26913712 |
tccttcattatgtgcatttatttctagttattctacttta |
26913751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 26913579 - 26913619
Alignment:
| Q |
22 |
aagaagaatagtggaggtggttttcctgtgcttccggttca |
62 |
Q |
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| T |
26913579 |
aagaagaatagtggaggtggttttccattggttccggttca |
26913619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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