View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13314_low_12 (Length: 466)
Name: NF13314_low_12
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 9123556 - 9123235
Alignment:
| Q |
1 |
aaaagtatacaaaaa-caacttgacttgtaaggaaagtctacaaatcaacaaaattaaaaaccaaagaaggtcgttgctgtacaatttcaattgccttgc |
99 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9123556 |
aaaagtatacaaaaaacaacttgacttgtaaggaaagtctacaaatcaacaaaattaaaaaccaaagaaggtcgttgctgtacaatttcaattgccttgc |
9123457 |
T |
|
| Q |
100 |
tctactcctaatacaattgtagacactctaagaatagatgaaaccttaatctattcagaaatattttaaatacnnnnnnnnnntctaatttatagggcat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
9123456 |
tctactcctaatacaattgtagacactctaagaatagatgaaaccttcatctattcaaaaatattttaaata-taaaaaaaattctaatttatagggcat |
9123358 |
T |
|
| Q |
200 |
acatgtgcat-aaaaaataatttaaaaggacgccattcctgtcatatgcaattgagtgggagtcgtaggatagtttgagaaaagaacatatgaattgaat |
298 |
Q |
| |
|
|||||||||| ||||||||||||||||| | ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
9123357 |
acatgtgcataaaaaaataatttaaaagtaaaccattcctgtcatatgcaattgaatgggagtc--------gtttgagagaagaacatatgaattgaat |
9123266 |
T |
|
| Q |
299 |
gataaatagattgagttcaaatttgtcttat |
329 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |
|
|
| T |
9123265 |
gataaatagattaagttcaaatttgtcttat |
9123235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 387 - 429
Target Start/End: Complemental strand, 9122722 - 9122680
Alignment:
| Q |
387 |
tataatataatcaactgcactatcaattttttcacctagacta |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9122722 |
tataatataatcaactgcactatcaattttttcacctagacta |
9122680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University