View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13314_low_15 (Length: 438)

Name: NF13314_low_15
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13314_low_15
NF13314_low_15
[»] chr8 (5 HSPs)
chr8 (166-326)||(21227843-21228003)
chr8 (19-139)||(21227689-21227808)
chr8 (328-438)||(31402911-31403021)
chr8 (327-390)||(6892070-6892133)
chr8 (400-438)||(26479395-26479433)
[»] chr1 (2 HSPs)
chr1 (327-390)||(43191654-43191717)
chr1 (400-438)||(28031922-28031960)
[»] chr6 (1 HSPs)
chr6 (328-438)||(30608865-30608974)
[»] chr7 (3 HSPs)
chr7 (400-438)||(19157968-19158006)
chr7 (400-438)||(20757367-20757405)
chr7 (400-438)||(44483501-44483539)
[»] chr4 (2 HSPs)
chr4 (400-438)||(32592813-32592851)
chr4 (330-390)||(42239395-42239455)
[»] chr3 (1 HSPs)
chr3 (400-438)||(29838364-29838402)


Alignment Details
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 166 - 326
Target Start/End: Original strand, 21227843 - 21228003
Alignment:
Q  166 ctttacttctcttacaaacccctctttctttgctcatcacctaaaaagacacgcttttttagtcatttgcgtgtttgccactacggagtgtatgtttttg 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21227843 ctttacttctcttacaaacccctctttctttgctcatcacctaaaaagacacgcttttttagtcatttgcgtgtttgccactacggagtgtatgtttttg 21227942  T
Q  266 tcttaagcaacgtgtaaaatgaatcaatcaactcaaaataatagttcggaatttcaataat 326  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  21227943 tcttaagcaccgtgtaaaatgaatcaatcaactcaaaaaaatagtttggaatttcaataat 21228003  T

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Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 21227689 - 21227808
Alignment:
Q  19 atccactcatgaagaatcgtcggaaatttcaattcaattcagtgttatgtgtgaaagnnnnnnnngagtagagaatgtaatgtaatgatataaggcttct 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||    
T  21227689 atccactcatgaagaatcgtcggaaatttcaattcaattcagtgttatgtgtgaaag-aaaaaaagagtagagaatgtaatgtaatgatataaggcttct 21227787  T
Q  119 tcgcgcgcctgcgaccacacc 139  Q
    |||||||||||||||||||||    
T  21227788 tcgcgcgcctgcgaccacacc 21227808  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 438
Target Start/End: Original strand, 31402911 - 31403021
Alignment:
Q  328 gcttaaatacgaaaattatccccgtaaatatatgatattttagttttagtctttgtaaaaatannnnnnnnngttttagtctctgcaaatattaaaattt 427  Q
    ||||||||| ||||||  |||| | |||||| ||||||||| ||||||||| |||||||||||         ||||||||| |||||||||| |||  ||    
T  31402911 gcttaaatatgaaaatagtccctgcaaatatctgatattttggttttagtccttgtaaaaatattttttggggttttagtccctgcaaatataaaatatt 31403010  T
Q  428 tggttttggtc 438  Q
    |||||||||||    
T  31403011 tggttttggtc 31403021  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 390
Target Start/End: Complemental strand, 6892133 - 6892070
Alignment:
Q  327 agcttaaatacgaaaattatccccgtaaatatatgatattttagttttagtctttgtaaaaata 390  Q
    |||||||||| |||||| ||||  |||||||| ||| |||||||||||||||  ||||||||||    
T  6892133 agcttaaatatgaaaataatccttgtaaatatctgacattttagttttagtccctgtaaaaata 6892070  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Original strand, 26479395 - 26479433
Alignment:
Q  400 gttttagtctctgcaaatattaaaattttggttttggtc 438  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  26479395 gttttagtcactgcaaatataaaaattttggttttggtc 26479433  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 390
Target Start/End: Original strand, 43191654 - 43191717
Alignment:
Q  327 agcttaaatacgaaaattatccccgtaaatatatgatattttagttttagtctttgtaaaaata 390  Q
    |||||||||| ||||||| |||| | |||||| |||||||||||||||||||  ||||||||||    
T  43191654 agcttaaatatgaaaattgtccctgcaaatatctgatattttagttttagtccctgtaaaaata 43191717  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Complemental strand, 28031960 - 28031922
Alignment:
Q  400 gttttagtctctgcaaatattaaaattttggttttggtc 438  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  28031960 gttttagtccctgcaaatataaaaattttggttttggtc 28031922  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 438
Target Start/End: Original strand, 30608865 - 30608974
Alignment:
Q  328 gcttaaatacgaaaattatccccgtaaatatatgatattttagttttagtctttgtaaaaatannnnnnnnngttttagtctctgcaaatattaaaattt 427  Q
    ||||||||| ||||||  |||| | |||||| |||||||||||||||||||  ||||||||||         ||||||||| |||||||||| |||| ||    
T  30608865 gcttaaatatgaaaatagtccctgcaaatatttgatattttagttttagtccctgtaaaaata-tttttttggttttagtccctgcaaatataaaaaatt 30608963  T
Q  428 tggttttggtc 438  Q
    |||||||||||    
T  30608964 tggttttggtc 30608974  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Complemental strand, 19158006 - 19157968
Alignment:
Q  400 gttttagtctctgcaaatattaaaattttggttttggtc 438  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  19158006 gttttagtccctgcaaatataaaaattttggttttggtc 19157968  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Complemental strand, 20757405 - 20757367
Alignment:
Q  400 gttttagtctctgcaaatattaaaattttggttttggtc 438  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  20757405 gttttagtccctgcaaatataaaaattttggttttggtc 20757367  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Complemental strand, 44483539 - 44483501
Alignment:
Q  400 gttttagtctctgcaaatattaaaattttggttttggtc 438  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  44483539 gttttagtccctgcaaatataaaaattttggttttggtc 44483501  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Original strand, 32592813 - 32592851
Alignment:
Q  400 gttttagtctctgcaaatattaaaattttggttttggtc 438  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  32592813 gttttagtccctgcaaatataaaaattttggttttggtc 32592851  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 390
Target Start/End: Complemental strand, 42239455 - 42239395
Alignment:
Q  330 ttaaatacgaaaattatccccgtaaatatatgatattttagttttagtctttgtaaaaata 390  Q
    ||||||| ||||||  |||| | |||||| ||| |||||||||||||||| ||||||||||    
T  42239455 ttaaatatgaaaatagtccctgcaaatatctgacattttagttttagtctctgtaaaaata 42239395  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Original strand, 29838364 - 29838402
Alignment:
Q  400 gttttagtctctgcaaatattaaaattttggttttggtc 438  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  29838364 gttttagtctctgcaaatataaaaaatttggttttggtc 29838402  T

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