View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13314_low_18 (Length: 433)
Name: NF13314_low_18
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 31775688 - 31776117
Alignment:
| Q |
1 |
aaaagaaccgatcaagagttacaatccgatcatgaatgaaattcagatgtctaaagagcaattgtctatcttttgcttatacactaaccctattcatata |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31775688 |
aaaagagccgatcaagagttacaatccgatcatgaacgaaattcagatgtctaaagagcaattgtctatcttttgcgtatacactaaccctattcatata |
31775787 |
T |
|
| Q |
101 |
acctgcaagtttaagcgacccgattaaaagagattgactagcacagataccctcgtacgtagcttaggttttattctcacaa---tattataacacacac |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31775788 |
acctgcaagtttaagcgacccgattaaaagagattgactagcacggatatcctcgtacgtagcttaggttttattctcacaatattattataacacacac |
31775887 |
T |
|
| Q |
198 |
gggtaagtctgtgttcaaggttctattattggttagcacattaaattaaaataaagtaacaagtgaaaaatcttatttttcccagaacatacatacattg |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31775888 |
gggtaagtctgtgttcaaggttctattattggttagcacattaaattaaaataaagtaacaagtgaaaaatctta-ttttcccagaacatacatacattg |
31775986 |
T |
|
| Q |
298 |
atgcatttgtgccccccacaacttctcattttgtagcatgacacttggattttttggtttgtcttcatatgttgtctttctgaaagcaatcttcctctca |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31775987 |
atgcatttgtgccccccacaacttctcattttgtagcatgacacttggattttttggtttgtcttcatatgttgtctttctgaaagcaatcttcctctca |
31776086 |
T |
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| Q |
398 |
ttatcaaactttgtcctacgaatcctatgct |
428 |
Q |
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|||||||||| |||||||||||||||||||| |
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| T |
31776087 |
ttatcaaactctgtcctacgaatcctatgct |
31776117 |
T |
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