View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13314_low_19 (Length: 423)

Name: NF13314_low_19
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13314_low_19
NF13314_low_19
[»] chr3 (15 HSPs)
chr3 (11-139)||(30058307-30058435)
chr3 (11-139)||(29401036-29401164)
chr3 (15-136)||(9734983-9735104)
chr3 (15-136)||(19340494-19340613)
chr3 (14-82)||(1995033-1995101)
chr3 (174-222)||(17615238-17615286)
chr3 (15-109)||(52000362-52000456)
chr3 (365-407)||(17619163-17619205)
chr3 (372-407)||(27359861-27359896)
chr3 (364-407)||(51341881-51341924)
chr3 (366-407)||(54285835-54285876)
chr3 (364-407)||(4300940-4300983)
chr3 (364-407)||(40929875-40929918)
chr3 (365-407)||(28422864-28422906)
chr3 (366-407)||(29032824-29032865)
[»] chr2 (4 HSPs)
chr2 (11-138)||(19315372-19315499)
chr2 (372-408)||(9244250-9244286)
chr2 (372-407)||(39240880-39240915)
chr2 (374-406)||(29558160-29558192)
[»] chr1 (10 HSPs)
chr1 (15-145)||(37136518-37136648)
chr1 (9-137)||(31776947-31777075)
chr1 (24-136)||(50358363-50358475)
chr1 (63-138)||(31500132-31500207)
chr1 (366-407)||(42026903-42026944)
chr1 (366-407)||(42031713-42031754)
chr1 (372-407)||(16801980-16802015)
chr1 (372-407)||(17238604-17238639)
chr1 (372-407)||(17239432-17239467)
chr1 (15-51)||(40971233-40971269)
[»] chr7 (13 HSPs)
chr7 (11-136)||(5780433-5780558)
chr7 (15-135)||(47241401-47241521)
chr7 (15-118)||(7108073-7108176)
chr7 (364-407)||(5995260-5995303)
chr7 (365-407)||(5997630-5997672)
chr7 (364-407)||(41970895-41970938)
chr7 (364-407)||(45551005-45551048)
chr7 (364-407)||(45551823-45551866)
chr7 (372-408)||(28778125-28778161)
chr7 (372-407)||(1409383-1409418)
chr7 (372-407)||(27268268-27268303)
chr7 (372-407)||(38887338-38887373)
chr7 (58-115)||(7344430-7344485)
[»] chr6 (9 HSPs)
chr6 (10-136)||(11430840-11430966)
chr6 (15-136)||(20528149-20528270)
chr6 (11-138)||(3005174-3005301)
chr6 (15-136)||(15572446-15572567)
chr6 (19-88)||(18991543-18991611)
chr6 (364-407)||(8683874-8683917)
chr6 (364-407)||(19237621-19237664)
chr6 (364-407)||(17280717-17280760)
chr6 (355-407)||(5860557-5860610)
[»] chr8 (9 HSPs)
chr8 (15-136)||(3887673-3887794)
chr8 (17-137)||(22835906-22836026)
chr8 (174-222)||(16105805-16105853)
chr8 (365-407)||(30971292-30971334)
chr8 (366-407)||(16106044-16106085)
chr8 (366-407)||(16113284-16113325)
chr8 (364-407)||(30972024-30972067)
chr8 (366-407)||(16101530-16101571)
chr8 (174-217)||(16113046-16113089)
[»] chr5 (7 HSPs)
chr5 (15-136)||(7981479-7981600)
chr5 (23-136)||(27625524-27625637)
chr5 (15-136)||(11399889-11400011)
chr5 (15-118)||(17816646-17816749)
chr5 (11-76)||(28823106-28823171)
chr5 (364-402)||(22671618-22671656)
chr5 (364-407)||(33471172-33471215)
[»] chr4 (17 HSPs)
chr4 (11-137)||(49863088-49863214)
chr4 (11-106)||(55957897-55957992)
chr4 (291-407)||(20627534-20627655)
chr4 (174-222)||(12207004-12207052)
chr4 (364-407)||(23088283-23088326)
chr4 (366-407)||(31689184-31689225)
chr4 (364-407)||(23089288-23089331)
chr4 (364-407)||(31135177-31135220)
chr4 (50-105)||(31976735-31976789)
chr4 (365-407)||(31914530-31914572)
chr4 (364-406)||(34978352-34978394)
chr4 (366-407)||(12206771-12206812)
chr4 (366-407)||(12210938-12210979)
chr4 (98-138)||(55957256-55957296)
chr4 (372-407)||(31908379-31908414)
chr4 (364-407)||(34836757-34836800)
chr4 (372-407)||(48314374-48314409)
[»] scaffold0112 (1 HSPs)
scaffold0112 (368-407)||(24735-24774)
[»] scaffold0015 (1 HSPs)
scaffold0015 (372-407)||(45340-45375)
[»] scaffold0676 (1 HSPs)
scaffold0676 (372-407)||(3169-3204)


Alignment Details
Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 30058307 - 30058435
Alignment:
Q  11 agggtattttggtaatgtgtaacaaaggatatatagttattttggatccacattgccacatgttgcatttatgtgtggaggtataagaggtgtatgccac 110  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||| ||| |||| ||||||||| ||    
T  30058307 agggtattttggtaatgtgtaacaaaggatatgtagttattttggacccacattgccacatgctgcatttatgtgtgggggtttaaggggtgtatgcgac 30058406  T
Q  111 atatgtgtatctatgtataagcactcatt 139  Q
     ||||||| ||||||||||||||||||||    
T  30058407 ctatgtgtgtctatgtataagcactcatt 30058435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 29401036 - 29401164
Alignment:
Q  11 agggtattttggtaatgtgtaacaaaggatatatagttattttggatccacattgccacatgttgcatttatgtgtggaggtataagaggtgtatgccac 110  Q
    |||||||||||||||||||||||||||||||| ||||||||||| | ||| ||||||||||||||||||||||||||  ||| |||  |||||||| |||    
T  29401036 agggtattttggtaatgtgtaacaaaggatatgtagttattttgaacccagattgccacatgttgcatttatgtgtgagggtttaaagggtgtatgtcac 29401135  T
Q  111 atatgtgtatctatgtataagcactcatt 139  Q
     |||| || ||||||||||| ||||||||    
T  29401136 ctatgcgtgtctatgtataaacactcatt 29401164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 9734983 - 9735104
Alignment:
Q  15 tattttggtaatgtgtaacaaaggatatatagttattttggatccacattgccacatgttgcatttatgtgtggaggtataagaggtgtatgccacatat 114  Q
    ||||||| ||||||| |||||| ||||  ||||||||||| | ||||||||||||||||||||||||| | ||||||| |||| |||||||||||| |||    
T  9734983 tattttgataatgtgaaacaaatgataagtagttattttgaacccacattgccacatgttgcatttatatatggaggtttaaggggtgtatgccacctat 9735082  T
Q  115 gtgtatctatgtataagcactc 136  Q
    |||| |||||||||||||||||    
T  9735083 gtgtgtctatgtataagcactc 9735104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 19340494 - 19340613
Alignment:
Q  15 tattttggtaatgtgtaacaaaggatatatagttattttggatccacattgccacatgttgcatttatgtgtggaggtataagaggtgtatgccacatat 114  Q
    ||||||||||||||| |||||| |||||  |||||||||||| ||||||| |||| |||||||||||| ||||| ||| |||| |||||||||||| |||    
T  19340494 tattttggtaatgtgaaacaaatgatat--agttattttggacccacattaccacgtgttgcatttatatgtgggggtttaaggggtgtatgccacctat 19340591  T
Q  115 gtgtatctatgtataagcactc 136  Q
    || | |||||||||||||||||    
T  19340592 gtatgtctatgtataagcactc 19340613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 1995101 - 1995033
Alignment:
Q  14 gtattttggtaatgtgtaacaaaggatatatagttattttggatccacattgccacatgttgcatttat 82  Q
    |||||||| |||||||||||||| ||||||||||||||||| | ||||||| |||||||||| ||||||    
T  1995101 gtattttgataatgtgtaacaaatgatatatagttattttgtacccacattaccacatgttgtatttat 1995033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 17615286 - 17615238
Alignment:
Q  174 ttgcatttgattttaagttaatggaagcaagcacaatatggaaggaagg 222  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17615286 ttgcatttgattttaagttaatggaagcaagcacaacatggaaggaagg 17615238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 52000456 - 52000362
Alignment:
Q  15 tattttggtaatgtgtaacaaaggatatatagttattttggatccacattgccacatgttgcatttatgtgtggaggtataagaggtgtatgcca 109  Q
    |||||||||||| || |||||||||||  |||||||||| || ||||||| ||||||||||||||||| |||||  || |||| | |||||||||    
T  52000456 tattttggtaatatgaaacaaaggataagtagttattttagacccacattaccacatgttgcatttatatgtgggagtttaagggatgtatgcca 52000362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 365 - 407
Target Start/End: Original strand, 17619163 - 17619205
Alignment:
Q  365 tggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  17619163 tggttgctaaaatagaccttcatgaaaatgagtgggtctattg 17619205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 407
Target Start/End: Original strand, 27359861 - 27359896
Alignment:
Q  372 taaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||||||||||||||||||||||||||||||||||    
T  27359861 taaaatagaccttcatgaaaatgagtgggtctattg 27359896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 51341924 - 51341881
Alignment:
Q  364 ttggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    |||||||||||||||||||||||||| ||||||| |||||||||    
T  51341924 ttggttgttaaaatagaccttcatgagaatgagtaggtctattg 51341881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 366 - 407
Target Start/End: Original strand, 54285835 - 54285876
Alignment:
Q  366 ggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||| |||||||||||||||| |||||||||||||||||||    
T  54285835 ggttgctaaaatagaccttcataaaaatgagtgggtctattg 54285876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 4300983 - 4300940
Alignment:
Q  364 ttggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||||| ||||||||| |||||||||||| |||||||||||||    
T  4300983 ttggttgctaaaatagatcttcatgaaaataagtgggtctattg 4300940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 407
Target Start/End: Original strand, 40929875 - 40929918
Alignment:
Q  364 ttggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||||| ||||||| |||||||| |||||||||||||||||||    
T  40929875 ttggttgctaaaataaaccttcataaaaatgagtgggtctattg 40929918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 407
Target Start/End: Original strand, 28422864 - 28422906
Alignment:
Q  365 tggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    |||||| |||||||||| ||||| |||||||||||||||||||    
T  28422864 tggttgctaaaatagactttcataaaaatgagtgggtctattg 28422906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 407
Target Start/End: Original strand, 29032824 - 29032865
Alignment:
Q  366 ggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||| |||||||||||||||| ||||||| |||||||||||    
T  29032824 ggttgctaaaatagaccttcataaaaatgaatgggtctattg 29032865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 19315372 - 19315499
Alignment:
Q  11 agggtattttggtaatgtgtaacaaaggatatatagttattttggatccacattgccacatgttgcatttatgtgtggaggtataagaggtgtatgccac 110  Q
    ||||||||||||||||||||||||||| |||| || |||||||||| ||||||| ||||||||||||||||||||||| ||| |||| |||||||| |||    
T  19315372 agggtattttggtaatgtgtaacaaagaatatgtaattattttggacccacattaccacatgttgcatttatgtgtgggggtttaaggggtgtatgtcac 19315471  T
Q  111 atatgtgtatctatgtataagcactcat 138  Q
     ||||| | |||||||||||||||||||    
T  19315472 ctatgtatgtctatgtataagcactcat 19315499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 372 - 408
Target Start/End: Complemental strand, 9244286 - 9244250
Alignment:
Q  372 taaaatagaccttcatgaaaatgagtgggtctattga 408  Q
    |||||||||||||||| ||||||||||||||||||||    
T  9244286 taaaatagaccttcataaaaatgagtgggtctattga 9244250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 372 - 407
Target Start/End: Original strand, 39240880 - 39240915
Alignment:
Q  372 taaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39240880 taaaatagaccttcatgaaaatgggtgggtctattg 39240915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 406
Target Start/End: Complemental strand, 29558192 - 29558160
Alignment:
Q  374 aaatagaccttcatgaaaatgagtgggtctatt 406  Q
    |||||||||||||| ||||||||||||||||||    
T  29558192 aaatagaccttcataaaaatgagtgggtctatt 29558160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 9e-37; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 37136648 - 37136518
Alignment:
Q  15 tattttggtaatgtgtaacaaaggatatatagttattttggatccacattgccacatgttgcatttatgtgtggaggtataagaggtgtatgccacatat 114  Q
    ||||||||||||||| |||||||||||  || |||||||| | ||||||||||||||||||||||||| ||||||||| |||| | ||||||| || |||    
T  37136648 tattttggtaatgtgaaacaaaggataagtaattattttgaacccacattgccacatgttgcatttatatgtggaggtttaagggatgtatgctacctat 37136549  T
Q  115 gtgtatctatgtataagcactcattcattaa 145  Q
    |||| ||||||||||||||||||||||||||    
T  37136548 gtgtgtctatgtataagcactcattcattaa 37136518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 31777075 - 31776947
Alignment:
Q  9 gaagggtattttggtaatgtgtaacaaaggatatatagttattttggatccacattgccacatgttgcatttatgtgtggaggtataagaggtgtatgcc 108  Q
    ||||| ||||||||||||||| |||||||||||  |||||||||| || |||||||| |||||||||||||||| ||||| ||| |||| ||||||||||    
T  31777075 gaaggttattttggtaatgtgaaacaaaggataagtagttattttagacccacattgtcacatgttgcatttatatgtgggggtttaaggggtgtatgcc 31776976  T
Q  109 acatatgtgtatctatgtataagcactca 137  Q
    || ||||||  ||||||||||||||||||    
T  31776975 acctatgtgcgtctatgtataagcactca 31776947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 50358363 - 50358475
Alignment:
Q  24 aatgtgtaacaaaggatatatagttattttggatccacattgccacatgttgcatttatgtgtggaggtataagaggtgtatgccacatatgtgtatcta 123  Q
    |||||| |||||||||||  |||||||||| || ||||||| ||||||||||||||||| || || ||| |||| |||||||||||| ||||||| ||||    
T  50358363 aatgtgaaacaaaggataagtagttattttagacccacattaccacatgttgcatttatatgcgggggtttaaggggtgtatgccacctatgtgtgtcta 50358462  T
Q  124 tgtataagcactc 136  Q
    |||||||||||||    
T  50358463 tgtataagcactc 50358475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 31500132 - 31500207
Alignment:
Q  63 ttgccacatgttgcatttatgtgtggaggtataagaggtgtatgccacatatgtgtatctatgtataagcactcat 138  Q
    |||||||||||||||||||||||||| ||| |||| || ||||||||| ||||||| ||||||||||| |||||||    
T  31500132 ttgccacatgttgcatttatgtgtgggggtttaaggggcgtatgccacctatgtgtgtctatgtataaacactcat 31500207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 366 - 407
Target Start/End: Complemental strand, 42026944 - 42026903
Alignment:
Q  366 ggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  42026944 ggttgctaaaatagaccttcatgaaaatgagtgggtctattg 42026903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 366 - 407
Target Start/End: Original strand, 42031713 - 42031754
Alignment:
Q  366 ggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  42031713 ggttgctaaaatagaccttcatgaaaatgagtgggtctattg 42031754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 407
Target Start/End: Complemental strand, 16802015 - 16801980
Alignment:
Q  372 taaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||||||||||||||||||||||||||||||||||    
T  16802015 taaaatagaccttcatgaaaatgagtgggtctattg 16801980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 372 - 407
Target Start/End: Complemental strand, 17238639 - 17238604
Alignment:
Q  372 taaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    |||||||||||||||| |||||||||||||||||||    
T  17238639 taaaatagaccttcataaaaatgagtgggtctattg 17238604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 372 - 407
Target Start/End: Original strand, 17239432 - 17239467
Alignment:
Q  372 taaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    |||||||||||||||| |||||||||||||||||||    
T  17239432 taaaatagaccttcataaaaatgagtgggtctattg 17239467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 40971233 - 40971269
Alignment:
Q  15 tattttggtaatgtgtaacaaaggatatatagttatt 51  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  40971233 tattttggtaatgtgtaacaaatgatatgtagttatt 40971269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 5780558 - 5780433
Alignment:
Q  11 agggtattttggtaatgtgtaacaaaggatatatagttattttggatccacattgccacatgttgcatttatgtgtggaggtataagaggtgtatgccac 110  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||| |||| | |||||| |||    
T  5780558 agggtatttcggtaatgtgtaacaaaggatatatagttattttggacccatattgccacatgttacatttatgtgtgggggtttaagggatgtatgtcac 5780459  T
Q  111 atatgtgtatctatgtataagcactc 136  Q
     ||||||| ||||||| |||||||||    
T  5780458 ctatgtgtgtctatgtgtaagcactc 5780433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 47241401 - 47241521
Alignment:
Q  15 tattttggtaatgtgtaacaaaggatatatagttattttggatccacattgccacatgttgcatttatgtgtggaggtataagaggtgtatgccacatat 114  Q
    ||||||||||||||| |||||| ||||  ||||||||||||| ||||||||||||||||||||||||| ||||  ||| ||||| ||||||||||| |||    
T  47241401 tattttggtaatgtgaaacaaatgataagtagttattttggacccacattgccacatgttgcatttatatgtgagggtttaagaagtgtatgccacctat 47241500  T
Q  115 gtgtatctatgtataagcact 135  Q
    |||| ||||||||||||||||    
T  47241501 gtgtgtctatgtataagcact 47241521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 7108176 - 7108073
Alignment:
Q  15 tattttggtaatgtgtaacaaaggatatatagttattttggatccacattgccacatgttgcatttatgtgtggaggtataagaggtgtatgccacatat 114  Q
    ||||||||||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||||||| ||||| ||| |||| |||||||||||| |||    
T  7108176 tattttggtaatgtgaaacaaaggataagtagttattttggacccacattgccacatgttgcatttatatgtgggggtttaaggggtgtatgccacctat 7108077  T
Q  115 gtgt 118  Q
    ||||    
T  7108076 gtgt 7108073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 5995303 - 5995260
Alignment:
Q  364 ttggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  5995303 ttggttgctaaaatagaccttcatgaaaatgagtgggtctattg 5995260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 365 - 407
Target Start/End: Original strand, 5997630 - 5997672
Alignment:
Q  365 tggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  5997630 tggttgctaaaatagaccttcatgaaaatgagtgggtctattg 5997672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 41970938 - 41970895
Alignment:
Q  364 ttggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||    
T  41970938 ttggttgctaaaatagatcttcatgaaaatgagtgggtctattg 41970895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 45551048 - 45551005
Alignment:
Q  364 ttggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||||| |||||||||||||||||||| |||||||||||||||    
T  45551048 ttggttgctaaaatagaccttcatgaaattgagtgggtctattg 45551005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 407
Target Start/End: Original strand, 45551823 - 45551866
Alignment:
Q  364 ttggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||||| |||||||||||||||||||| |||||||||||||||    
T  45551823 ttggttgctaaaatagaccttcatgaaattgagtgggtctattg 45551866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 372 - 408
Target Start/End: Original strand, 28778125 - 28778161
Alignment:
Q  372 taaaatagaccttcatgaaaatgagtgggtctattga 408  Q
    ||||||||||||| |||||||||||||||||||||||    
T  28778125 taaaatagaccttgatgaaaatgagtgggtctattga 28778161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 372 - 407
Target Start/End: Complemental strand, 1409418 - 1409383
Alignment:
Q  372 taaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    |||||||||||||||| |||||||||||||||||||    
T  1409418 taaaatagaccttcataaaaatgagtgggtctattg 1409383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 372 - 407
Target Start/End: Original strand, 27268268 - 27268303
Alignment:
Q  372 taaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    |||||||||||||||||||||||||||| |||||||    
T  27268268 taaaatagaccttcatgaaaatgagtggatctattg 27268303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 372 - 407
Target Start/End: Complemental strand, 38887373 - 38887338
Alignment:
Q  372 taaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||||||||||||||||||||||||| ||||||||    
T  38887373 taaaatagaccttcatgaaaatgagtgagtctattg 38887338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 7344430 - 7344485
Alignment:
Q  58 ccacattgccacatgttgcatttatgtgtggaggtataagaggtgtatgccacatatg 115  Q
    |||||||| |||||||||||||| ||||||| ||| ||| ||||||||||||||||||    
T  7344430 ccacattggcacatgttgcattt-tgtgtgggggtttaa-aggtgtatgccacatatg 7344485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 11430966 - 11430840
Alignment:
Q  10 aagggtattttggtaatgtgtaacaaaggatatatagttattttggatccacattgccacatgttgcatttatgtgtggaggtataagaggtgtatgcca 109  Q
    |||| ||||||||||||||| |||||| ||||  ||||||||||||| ||||||||||| ||||||||||||| ||||| ||| |||| |||||||||||    
T  11430966 aaggttattttggtaatgtgaaacaaatgataagtagttattttggacccacattgccatatgttgcatttatatgtgggggtttaaggggtgtatgcca 11430867  T
Q  110 catatgtgtatctatgtataagcactc 136  Q
    | ||||||| |||||||||||||||||    
T  11430866 cctatgtgtgtctatgtataagcactc 11430840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 20528149 - 20528270
Alignment:
Q  15 tattttggtaatgtgtaacaaaggatatatagttattttggatccacattgccacatgttgcatttatgtgtggaggtataagaggtgtatgccacatat 114  Q
    ||||||||||||||| |||||||||||  ||||||||||||| ||||||||||||||||| ||||||| ||||| ||| |||| |||||||||||| |||    
T  20528149 tattttggtaatgtgaaacaaaggataagtagttattttggacccacattgccacatgttacatttatatgtgggggtttaaggggtgtatgccacctat 20528248  T
Q  115 gtgtatctatgtataagcactc 136  Q
    |||| ||||||||||| |||||    
T  20528249 gtgtgtctatgtataaacactc 20528270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 3005301 - 3005174
Alignment:
Q  11 agggtattttggtaatgtgtaacaaaggatatatagttattttggatccacattgccacatgttgcatttatgtgtggaggtataagaggtgtatgccac 110  Q
    ||||||||||||||||||| |||||| ||||| ||||||||||||| ||||||| ||||||||||||||||||||||| ||| |||  |||||||| |||    
T  3005301 agggtattttggtaatgtgcaacaaatgatatgtagttattttggacccacatttccacatgttgcatttatgtgtgggggtttaaatggtgtatgtcac 3005202  T
Q  111 atatgtgtatctatgtataagcactcat 138  Q
     ||||||| |||||||| ||||| ||||    
T  3005201 ctatgtgtgtctatgtaaaagcaatcat 3005174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 15572567 - 15572446
Alignment:
Q  15 tattttggtaatgtgtaacaaaggatatatagttattttggatccacattgccacatgttgcatttatgtgtggaggtataagaggtgtatgccacatat 114  Q
    |||||||||||||||||| ||||||||| |||| |||||||| |||||||||||||| |||||||||||||||| ||| |||| |||||||||||| |||    
T  15572567 tattttggtaatgtgtaataaaggatatgtagtcattttggacccacattgccacatcttgcatttatgtgtgggggtttaaggggtgtatgccacctat 15572468  T
Q  115 gtgtatctatgtataagcactc 136  Q
      || ||| |||||||||||||    
T  15572467 acgtgtctgtgtataagcactc 15572446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 18991611 - 18991543
Alignment:
Q  19 ttggtaatgtgtaacaaaggatatatagttattttggatccacattgccacatgttgcatttatgtgtgg 88  Q
    |||||||  |||||| |||||| | |||||||||||||||||||||||||||||||||| ||||||||||    
T  18991611 ttggtaacatgtaaccaaggatgtgtagttattttggatccacattgccacatgttgca-ttatgtgtgg 18991543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 407
Target Start/End: Original strand, 8683874 - 8683917
Alignment:
Q  364 ttggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  8683874 ttggttgctaaaatagaccttcatgaaaatgagtgggtctattg 8683917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 407
Target Start/End: Original strand, 19237621 - 19237664
Alignment:
Q  364 ttggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  19237621 ttggttgctaaaatagaccttcatgaaaatgagtgggtctattg 19237664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 407
Target Start/End: Original strand, 17280717 - 17280760
Alignment:
Q  364 ttggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||||| ||||||||||||| ||||||||||||||||| ||||    
T  17280717 ttggttgctaaaatagaccttaatgaaaatgagtgggtcaattg 17280760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 5860610 - 5860557
Alignment:
Q  355 tgaaaatgt-ttggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||||||| || |||| ||||||| |||||||| |||||||||||||||||||    
T  5860610 tgaaaatgtgtttgttgctaaaatacaccttcataaaaatgagtgggtctattg 5860557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 3887794 - 3887673
Alignment:
Q  15 tattttggtaatgtgtaacaaaggatatatagttattttggatccacattgccacatgttgcatttatgtgtggaggtataagaggtgtatgccacatat 114  Q
    ||||||||||||||| |||||| ||||  ||||||||||||| ||||||||||||||||||||||||| ||||| ||| |||| | |||||||||| |||    
T  3887794 tattttggtaatgtgaaacaaatgataagtagttattttggacccacattgccacatgttgcatttatatgtgggggtttaagggatgtatgccacctat 3887695  T
Q  115 gtgtatctatgtataagcactc 136  Q
    |||| |||||||||||||||||    
T  3887694 gtgtgtctatgtataagcactc 3887673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 22836026 - 22835906
Alignment:
Q  17 ttttggtaatgtgtaacaaaggatatatagttattttggatccacattgccacatgttgcatttatgtgtggaggtataagaggtgtatgccacatatgt 116  Q
    ||||| |||||| ||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||| |||| |||||||||||| |||||    
T  22836026 ttttgataatgtataacaaaggatatgtagttattttggacccactttgccacatgttgcatttatgtgtggaggtttaaggggtgtatgccacttatgt 22835927  T
Q  117 gtatctatgtataagcactca 137  Q
     | ||||||| ||||| ||||    
T  22835926 ttgtctatgtgtaagccctca 22835906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 16105805 - 16105853
Alignment:
Q  174 ttgcatttgattttaagttaatggaagcaagcacaatatggaaggaagg 222  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  16105805 ttgcatttgattttaagttaatggaagcaagcacaacatggaaggaagg 16105853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 365 - 407
Target Start/End: Complemental strand, 30971334 - 30971292
Alignment:
Q  365 tggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  30971334 tggttgctaaaatagaccttcatgaaaatgagtgggtctattg 30971292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 366 - 407
Target Start/End: Original strand, 16106044 - 16106085
Alignment:
Q  366 ggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  16106044 ggttgctaaaatagaccttcatgaaaatgagtgggtctattg 16106085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 366 - 407
Target Start/End: Original strand, 16113284 - 16113325
Alignment:
Q  366 ggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  16113284 ggttgctaaaatagaccttcatgaaaatgagtgggtctattg 16113325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 407
Target Start/End: Original strand, 30972024 - 30972067
Alignment:
Q  364 ttggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||||| |||||||||||||||||||| |||||||||||||||    
T  30972024 ttggttgctaaaatagaccttcatgaaattgagtgggtctattg 30972067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 366 - 407
Target Start/End: Complemental strand, 16101571 - 16101530
Alignment:
Q  366 ggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||| ||||||||||||||||||||||||||| ||||||||    
T  16101571 ggttgctaaaatagaccttcatgaaaatgagtgtgtctattg 16101530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 16113046 - 16113089
Alignment:
Q  174 ttgcatttgattttaagttaatggaagcaagcacaatatggaag 217  Q
    |||| |||||||||||||||| |||||||||||||| |||||||    
T  16113046 ttgcttttgattttaagttaacggaagcaagcacaaaatggaag 16113089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 8e-34; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 7981600 - 7981479
Alignment:
Q  15 tattttggtaatgtgtaacaaaggatatatagttattttggatccacattgccacatgttgcatttatgtgtggaggtataagaggtgtatgccacatat 114  Q
    ||||||||||||||| |||||||||||  ||||||||||||| | |||||  |||||||||||||||| ||||||||| |||| |||||||||||| |||    
T  7981600 tattttggtaatgtgaaacaaaggataagtagttattttggacctacattatcacatgttgcatttatatgtggaggtttaaggggtgtatgccacctat 7981501  T
Q  115 gtgtatctatgtataagcactc 136  Q
    |||| |||||||||||||||||    
T  7981500 gtgtgtctatgtataagcactc 7981479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 27625637 - 27625524
Alignment:
Q  23 taatgtgtaacaaaggatatatagttattttggatccacattgccacatgttgcatttatgtgtggaggtataagaggtgtatgccacatatgtgtatct 122  Q
    ||||||| |||||| ||||  ||||||| ||| | ||||||||||||||||||||||||| ||||  ||| |||| |||||||||||| ||||||| |||    
T  27625637 taatgtgaaacaaatgataagtagttatgttgaacccacattgccacatgttgcatttatatgtgagggtttaaggggtgtatgccacctatgtgtgtct 27625538  T
Q  123 atgtataagcactc 136  Q
    ||||||||||||||    
T  27625537 atgtataagcactc 27625524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 11399889 - 11400011
Alignment:
Q  15 tattttggtaatgtgtaacaaaggatatatagttattttggatccacattgccacatgttgcatttatgtgtggaggtataagaggtgtatgccacatat 114  Q
    ||||||| |||||||||||||||||||| ||||||||||| | ||||||||||| ||||||||||||||||||| ||| |||| ||| ||||| ||  ||    
T  11399889 tattttgataatgtgtaacaaaggatatgtagttattttgaacccacattgccatatgttgcatttatgtgtgg-ggtttaaggggtatatgcaaccaat 11399987  T
Q  115 gtgtatcta--tgtataagcactc 136  Q
    |||||| ||  |||||||||||||    
T  11399988 gtgtatatatgtgtataagcactc 11400011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 17816646 - 17816749
Alignment:
Q  15 tattttggtaatgtgtaacaaaggatatatagttattttggatccacattgccacatgttgcatttatgtgtggaggtataagaggtgtatgccacatat 114  Q
    ||||||||||||||| || ||| ||||  ||||||||||||| ||||||| ||||||||||||||||| ||||| ||| |||  ||||| |||||| |||    
T  17816646 tattttggtaatgtgaaataaatgataagtagttattttggacccacattaccacatgttgcatttatatgtgggggtttaaagggtgtgtgccacctat 17816745  T
Q  115 gtgt 118  Q
    ||||    
T  17816746 gtgt 17816749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 28823171 - 28823106
Alignment:
Q  11 agggtattttggtaatgtgtaacaaaggatatatagttattttggatccacattgccacatgttgc 76  Q
    ||||||||||||||||||||| |||| |||||||| |||||||| ||||| ||| |||||||||||    
T  28823171 agggtattttggtaatgtgtagcaaaagatatataattattttgaatccatattaccacatgttgc 28823106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 364 - 402
Target Start/End: Complemental strand, 22671656 - 22671618
Alignment:
Q  364 ttggttgttaaaatagaccttcatgaaaatgagtgggtc 402  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22671656 ttggttgttaaaatagaccttcatgaaaatgagtgggtc 22671618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 33471215 - 33471172
Alignment:
Q  364 ttggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||||| |||||||||||||||||||||||| |||||||||||    
T  33471215 ttggttgctaaaatagaccttcatgaaaatgaatgggtctattg 33471172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 49863088 - 49863214
Alignment:
Q  11 agggtattttggtaatgtgtaacaaaggatatatagttattttggatccacattgccacatgttgcatttatgtgtggaggtataagaggtgtatgccac 110  Q
    ||||||||||||||||||||||||||  |||| || ||||||| || ||||||| ||||||||||||||||||||||| ||| ||||  |||||||||||    
T  49863088 agggtattttggtaatgtgtaacaaaaaatatgtaattattttagacccacattaccacatgttgcatttatgtgtgggggtttaaggagtgtatgccac 49863187  T
Q  111 atatgtgtatctatgtataagcactca 137  Q
     ||||| | ||||||||||||||||||    
T  49863188 ctatgtatgtctatgtataagcactca 49863214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 55957992 - 55957897
Alignment:
Q  11 agggtattttggtaatgtgtaacaaaggatatatagttattttggatccacattgccacatgttgcatttatgtgtggaggtataagaggtgtatg 106  Q
    |||||||||||||||||||||||||| ||||| ||||||||||| |  |||||||||||||||||||||||||||||| ||| || | ||||||||    
T  55957992 agggtattttggtaatgtgtaacaaatgatatgtagttattttgaactcacattgccacatgttgcatttatgtgtgggggtttacggggtgtatg 55957897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 291 - 407
Target Start/End: Complemental strand, 20627655 - 20627534
Alignment:
Q  291 aaaattacatttgtgactttcagttatagttttcccaaaaaacaataacaaggggct--gtgtc--agtgaaaatgt-ttggttgttaaaatagaccttc 385  Q
    ||||| ||||||||||| || |||| ||||||||||| ||||||| |||||||| ||  |||||  |||||||| || |||| || |||||||||| |||    
T  20627655 aaaatgacatttgtgacctttagttttagttttcccataaaacaaaaacaagggtctttgtgtccaagtgaaaaggtgttgggtgctaaaatagactttc 20627556  T
Q  386 atgaaaatgagtgggtctattg 407  Q
    ||||||||||||||||||||||    
T  20627555 atgaaaatgagtgggtctattg 20627534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 12207052 - 12207004
Alignment:
Q  174 ttgcatttgattttaagttaatggaagcaagcacaatatggaaggaagg 222  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12207052 ttgcatttgattttaagttaatggaagcaagcacaacatggaaggaagg 12207004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 23088326 - 23088283
Alignment:
Q  364 ttggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  23088326 ttggttgctaaaatagaccttcatgaaaatgagtgggtctattg 23088283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 366 - 407
Target Start/End: Complemental strand, 31689225 - 31689184
Alignment:
Q  366 ggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  31689225 ggttgctaaaatagaccttcatgaaaatgagtgggtctattg 31689184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 407
Target Start/End: Original strand, 23089288 - 23089331
Alignment:
Q  364 ttggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||||| |||||||||||| |||||||||||||||||||||||    
T  23089288 ttggttgctaaaatagacctacatgaaaatgagtgggtctattg 23089331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 31135220 - 31135177
Alignment:
Q  364 ttggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||||| |||||||||||||||||||||||||| |||||||||    
T  31135220 ttggttgctaaaatagaccttcatgaaaatgagttggtctattg 31135177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 31976735 - 31976789
Alignment:
Q  50 ttttggatccacattgccacatgttgcatttatgtgtggaggtataagaggtgtat 105  Q
    ||||| |||||||||||| |||||||||||||||||||||||| ||| ||||||||    
T  31976735 ttttgaatccacattgccgcatgttgcatttatgtgtggaggtttaa-aggtgtat 31976789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 407
Target Start/End: Complemental strand, 31914572 - 31914530
Alignment:
Q  365 tggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    |||||| ||||||||| ||||||||||||||||||||||||||    
T  31914572 tggttgctaaaatagatcttcatgaaaatgagtgggtctattg 31914530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 406
Target Start/End: Complemental strand, 34978394 - 34978352
Alignment:
Q  364 ttggttgttaaaatagaccttcatgaaaatgagtgggtctatt 406  Q
    ||||||| |||||||||||||||| ||||||||||||||||||    
T  34978394 ttggttgataaaatagaccttcataaaaatgagtgggtctatt 34978352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 366 - 407
Target Start/End: Complemental strand, 12206812 - 12206771
Alignment:
Q  366 ggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||| |||||||||||||||| |||||||||||||||||||    
T  12206812 ggttgctaaaatagaccttcataaaaatgagtgggtctattg 12206771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 366 - 407
Target Start/End: Original strand, 12210938 - 12210979
Alignment:
Q  366 ggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||| |||||||||||||||||||||||||| |||||||||    
T  12210938 ggttgctaaaatagaccttcatgaaaatgagttggtctattg 12210979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 55957296 - 55957256
Alignment:
Q  98 aggtgtatgccacatatgtgtatctatgtataagcactcat 138  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  55957296 aggtgtatgccacctatgtgtgtctatgtataagcactcat 55957256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 372 - 407
Target Start/End: Original strand, 31908379 - 31908414
Alignment:
Q  372 taaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    |||||||||||||||| |||||||||||||||||||    
T  31908379 taaaatagaccttcataaaaatgagtgggtctattg 31908414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 34836800 - 34836757
Alignment:
Q  364 ttggttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||||| |||||||||||||||| ||||| |||||||||||||    
T  34836800 ttggttgataaaatagaccttcataaaaataagtgggtctattg 34836757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 372 - 407
Target Start/End: Complemental strand, 48314409 - 48314374
Alignment:
Q  372 taaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    |||||||||| |||||||||||||||||||||||||    
T  48314409 taaaatagactttcatgaaaatgagtgggtctattg 48314374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 368 - 407
Target Start/End: Complemental strand, 24774 - 24735
Alignment:
Q  368 ttgttaaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  24774 ttgttaaaatagaacttcatgaaaatgagtgggtctattg 24735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 407
Target Start/End: Complemental strand, 45375 - 45340
Alignment:
Q  372 taaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||||||||||||||||||||||||||||||||||    
T  45375 taaaatagaccttcatgaaaatgagtgggtctattg 45340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0676 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 372 - 407
Target Start/End: Complemental strand, 3204 - 3169
Alignment:
Q  372 taaaatagaccttcatgaaaatgagtgggtctattg 407  Q
    ||||||||||||||||||||||||| ||||||||||    
T  3204 taaaatagaccttcatgaaaatgagcgggtctattg 3169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University