View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13314_low_20 (Length: 418)
Name: NF13314_low_20
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 156 - 377
Target Start/End: Original strand, 24224891 - 24225117
Alignment:
| Q |
156 |
attgcttggaagaaacaaaagattagagaaattggtaacatgatgtttactttgatatggtaacttgcaccgttccactgactagaattatttctttgga |
255 |
Q |
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| T |
24224891 |
attgcttggtagaaacaaa---ttagagaaattgggaacatgatgtttgcttcgaaatggtaatttgcaacattccactaattggtattatttctttgga |
24224987 |
T |
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| Q |
256 |
ttttgtgagattcacggt-----------ttggatggttttgagcatgcttttgaaattaattgcatcactcatcaataatttggattttagagacatag |
344 |
Q |
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| T |
24224988 |
ttttt--agattcacggtgtgcatattgtttggatggttttgagcacg-ttttgaaattaattgcatcaatcatcaatattttggattttagagacgtag |
24225084 |
T |
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| Q |
345 |
aagttattcttttaccatggtatttccttgttt |
377 |
Q |
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| T |
24225085 |
aagttattctttcaccatggtatttacttgttt |
24225117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 24224764 - 24224824
Alignment:
| Q |
5 |
gcttccgctattgagttccctaaaatttg-ggaatgttgtgtgattgacttggtttaattt |
64 |
Q |
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| T |
24224764 |
gctttcgctattgagttcccaaaagtttaaggaatgttgtgtgattgatttggtttaattt |
24224824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 17927820 - 17927758
Alignment:
| Q |
5 |
gcttccgctattgagttccctaaaatttgggaatgttgtgtgattgacttggtttaatttctt |
67 |
Q |
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| T |
17927820 |
gcttccgctattgagttttcaaaagtttgggaatgttgtgtgattgatttggtttaatttctt |
17927758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 13166651 - 13166727
Alignment:
| Q |
5 |
gcttccgctattgagttccctaaaatttgggaatgttgtgtgattgacttggtttaatttcttgccttggtcttttg |
81 |
Q |
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| T |
13166651 |
gcttccgcttttgtgttcccaaaaatttgggaattttgtgtgattgatttggtttaatttatagtgttggtcttttg |
13166727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 10740797 - 10740855
Alignment:
| Q |
5 |
gcttccgctattgagttccctaaaatttgggaatgttgtgtgattgacttggtttaatt |
63 |
Q |
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| T |
10740797 |
gcttccgcagttgagttcccaaaagtttgggaatgttgtgtgattgatttggtttaatt |
10740855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 9401822 - 9401880
Alignment:
| Q |
6 |
cttccgctattgagttccctaaaatttgggaatgttgtgtgattgacttggtttaattt |
64 |
Q |
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| T |
9401822 |
cttccgttgttgagttcccaaaaatttgggaatattgtgtgattgatttggtttgattt |
9401880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 30385430 - 30385479
Alignment:
| Q |
15 |
ttgagttccctaaaatttgggaatgttgtgtgattgacttggtttaattt |
64 |
Q |
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| T |
30385430 |
ttgagttcccaaaattttggcaatgttgtgtgattgacttggtttaattt |
30385479 |
T |
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