View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13314_low_21 (Length: 418)
Name: NF13314_low_21
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 13 - 402
Target Start/End: Complemental strand, 30172056 - 30171664
Alignment:
| Q |
13 |
catcaagaaaaatatattgaccactagttgatttttaacttcatttttcctnnnnnnnnnga---ggtagcttatttacatgtggtatatatttccttaa |
109 |
Q |
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| T |
30172056 |
catcaagaaaaatatattgaccactagttgatttttaacttcatttttcctaaaaaaaaagaagaggtagcttatttacatgtggtatatatgtccttaa |
30171957 |
T |
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| Q |
110 |
caaacaactaaattaactaatcctataattctgggtcctaaatgagtgcattgacactattatatatctctcttttttctaccactagtgagcgtgaatt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30171956 |
caaacaactaaattaactaatcctataattctgggtcctaaatgagtgcattgacactattatatatctctcttttttctaccactagtgagcgtgaatt |
30171857 |
T |
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| Q |
210 |
actcttggcacgcaaacaaaccgtggaggatctctatataaacactttacatacaaagtgatgaacaatgcaatataatcatatacaaatttcccaagag |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30171856 |
actcttggcacgcaaacaaaccgtggaggatctctatataaacactttacatacaaagtgataaacaatgcaatataatcatatacaaatttcccaagag |
30171757 |
T |
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| Q |
310 |
agaatttaagaaatctaaataaaaattcaacaatggcatcatttacccttatcacctccctcccaaaatttggctctgctgcagcaactattg |
402 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30171756 |
agaatttaagaaatctaaataagaattcaacaatggcatcatttacccttatcacctccctcccaaaatttggctctgctgcagcaactattg |
30171664 |
T |
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