View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13314_low_22 (Length: 417)
Name: NF13314_low_22
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 4e-91; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 39863031 - 39863264
Alignment:
| Q |
1 |
actctcatatgtagcatagtcaagctcccacataccaactttttcttagttgatctattaattaataattatagcttttcaccgatggaaatttcaaaac |
100 |
Q |
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| T |
39863031 |
actctcatatgtagcatagtcaagctcccacataccaactttttcttagttcatctattaattt-------tagcttttcaccgatggaaatttcaaaac |
39863123 |
T |
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| Q |
101 |
aaactctaacaaaatgattattcgnnnnnnnaattatcgtttcaatgtggcgtcgtcaccgtcatcgttgtcgttgctagagatggtcatagagaaagag |
200 |
Q |
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| T |
39863124 |
aaactctaataaaatgattattcgtttttttaattatcgtttcaatgtggcgtcgtcaccgtcatcgttgttgttgctagagatggtcatagagtaagag |
39863223 |
T |
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| Q |
201 |
tggctgaacagagggagagggttccattatgattctcttca |
241 |
Q |
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| T |
39863224 |
tggctgaacagagggagagggtttcattatgattctcttca |
39863264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 284 - 404
Target Start/End: Original strand, 39864309 - 39864442
Alignment:
| Q |
284 |
taatctcattcgataataaaaatgttaaattaaattgtgggtc-------------aagataatgaatctgctaagggtttccaaattctcgacaagaaa |
370 |
Q |
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| T |
39864309 |
taatctcattcgataataaaaatgttaaattaaattgtgggtttccaattgtcttgaagaaaatgaatctgctaagggtttccaaattctcgacaagaaa |
39864408 |
T |
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| Q |
371 |
taaaaactgggtttacatagatcatatatgatga |
404 |
Q |
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| T |
39864409 |
taaaaaccgggtttacatagatcatatatgatga |
39864442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 39863277 - 39863331
Alignment:
| Q |
232 |
attctcttcattgctcaacattgggatgaaatttggggcttgggcatttgactaa |
286 |
Q |
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| T |
39863277 |
attctcttcattgctcaacattgggatgaaatttggggcttgggcatttgactaa |
39863331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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