View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13314_low_23 (Length: 405)
Name: NF13314_low_23
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 39238138 - 39237764
Alignment:
| Q |
19 |
aaaaaacaccgaaaaagcttatgtaggagcttttgttctaatgcttggtgttgttctttctgttactgcatttcctgttcttgctaggatccttgcagag |
118 |
Q |
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| T |
39238138 |
aaaaaacaccgaaaaagcttatgtaggagcttttgttctaatgcttggtgttgttctttctgttactgcatttcctgttcttgctaggatccttgcagag |
39238039 |
T |
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| Q |
119 |
ctaaaactgatcaacacagagttgggcagggttgctctttcatctgcactcattaatgatgttttgtcatgggtacttttggccatagcaattgctatgg |
218 |
Q |
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| T |
39238038 |
ctaaaactgatcaacacagagttgggcagggttgctctttcatctgcactcattaatgatgttttgtcatgggtacttttggccatagcaattgctatgg |
39237939 |
T |
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| Q |
219 |
cagagaatgaaagagttactttggcttctataatggttgtgttgtcaagtgcagcatttgttgcttttaatgtttttgttgtaagaccaataatcatgtg |
318 |
Q |
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| T |
39237938 |
cagagaatgaaagagttactttggcttctataatggttgtgttgtcaagtgcagcatttgttgcttttaatgtttttgttgtaagaccaataatcatgtg |
39237839 |
T |
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| Q |
319 |
gataataaggaaaacaccagaaggcgaaacgtttagcgatttctatatttgtttgatactagcaggtgtgatgat |
393 |
Q |
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| T |
39237838 |
gataataaggaaaacaccagaaggcgaaacgtttagcgatttctatatttgtttgatactagcaggtgtgatgat |
39237764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 44056212 - 44056105
Alignment:
| Q |
73 |
tctttctgttactgcatttcctgttcttgctaggatccttgcagagctaaaactgatcaacacagagttgggcagggttgctctttcatctgcactcatt |
172 |
Q |
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| T |
44056212 |
tctttctgtcactgcatttcctgttctagctaggatcctcgccgagctaaaactcatcaacacagatataggaaagcttgctctttcggctgcactcatc |
44056113 |
T |
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| Q |
173 |
aatgatgt |
180 |
Q |
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| T |
44056112 |
agtgatgt |
44056105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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