View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13314_low_24 (Length: 394)

Name: NF13314_low_24
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13314_low_24
NF13314_low_24
[»] chr7 (11 HSPs)
chr7 (20-313)||(44225195-44225488)
chr7 (38-150)||(2368797-2368909)
chr7 (20-170)||(4577-4726)
chr7 (20-170)||(38048166-38048315)
chr7 (20-150)||(38386707-38386836)
chr7 (20-143)||(19363612-19363734)
chr7 (311-378)||(44225098-44225165)
chr7 (43-112)||(24503458-24503527)
chr7 (262-313)||(24503271-24503322)
chr7 (40-145)||(12868962-12869065)
chr7 (38-145)||(26151853-26151958)
[»] chr6 (6 HSPs)
chr6 (20-313)||(1030452-1030745)
chr6 (20-150)||(12704350-12704479)
chr6 (20-163)||(4319617-4319759)
chr6 (20-150)||(31484170-31484300)
chr6 (20-170)||(32274992-32275142)
chr6 (311-378)||(1030355-1030422)
[»] chr3 (13 HSPs)
chr3 (20-313)||(14439627-14439919)
chr3 (20-313)||(30930404-30930697)
chr3 (42-313)||(54335978-54336246)
chr3 (42-313)||(20514679-20514957)
chr3 (38-149)||(27933725-27933834)
chr3 (20-170)||(39646293-39646442)
chr3 (20-150)||(35068713-35068842)
chr3 (20-141)||(34084615-34084735)
chr3 (20-106)||(19871619-19871704)
chr3 (311-375)||(30930727-30930791)
chr3 (43-110)||(30530785-30530852)
chr3 (311-375)||(14439949-14440013)
chr3 (311-376)||(20514987-20515051)
[»] chr4 (12 HSPs)
chr4 (20-313)||(50335099-50335391)
chr4 (20-200)||(50007333-50007513)
chr4 (20-170)||(55527309-55527458)
chr4 (143-248)||(12657064-12657169)
chr4 (20-170)||(24973542-24973691)
chr4 (20-170)||(34234506-34234654)
chr4 (43-112)||(41784335-41784405)
chr4 (20-77)||(45245144-45245200)
chr4 (318-371)||(50335428-50335481)
chr4 (38-106)||(21177806-21177874)
chr4 (44-112)||(5314613-5314681)
chr4 (326-378)||(41784065-41784117)
[»] chr1 (11 HSPs)
chr1 (20-313)||(12066798-12067081)
chr1 (40-150)||(30704116-30704226)
chr1 (20-170)||(33401920-33402069)
chr1 (20-170)||(28475276-28475425)
chr1 (20-149)||(48026547-48026675)
chr1 (20-170)||(33618346-33618496)
chr1 (20-89)||(23942629-23942698)
chr1 (45-170)||(7318857-7318980)
chr1 (43-131)||(35564020-35564108)
chr1 (311-375)||(12066704-12066768)
chr1 (326-378)||(7319146-7319198)
[»] chr8 (8 HSPs)
chr8 (20-313)||(5016468-5016761)
chr8 (71-312)||(32075719-32075958)
chr8 (20-147)||(34279012-34279138)
chr8 (24-170)||(5966680-5966825)
chr8 (43-149)||(30944319-30944425)
chr8 (43-104)||(15893503-15893564)
chr8 (311-376)||(32075623-32075688)
chr8 (38-106)||(29670796-29670864)
[»] chr5 (16 HSPs)
chr5 (43-313)||(20884320-20884591)
chr5 (38-150)||(17343830-17343941)
chr5 (20-170)||(28704410-28704558)
chr5 (20-170)||(759683-759832)
chr5 (43-148)||(26506610-26506713)
chr5 (140-248)||(29195335-29195443)
chr5 (20-170)||(28678414-28678564)
chr5 (20-150)||(5506119-5506249)
chr5 (20-168)||(30490243-30490391)
chr5 (311-378)||(20884621-20884688)
chr5 (42-106)||(6374287-6374351)
chr5 (312-378)||(26506887-26506953)
chr5 (20-100)||(34016484-34016563)
chr5 (40-104)||(14216909-14216973)
chr5 (20-51)||(20884001-20884032)
chr5 (326-375)||(17343595-17343644)
[»] chr2 (8 HSPs)
chr2 (20-313)||(9827701-9828004)
chr2 (41-309)||(22728876-22729147)
chr2 (20-170)||(8273768-8273917)
chr2 (20-148)||(35003764-35003891)
chr2 (42-168)||(26225180-26225305)
chr2 (45-149)||(14330033-14330135)
chr2 (311-378)||(9828034-9828101)
chr2 (326-378)||(14330318-14330370)
[»] scaffold0015 (1 HSPs)
scaffold0015 (42-226)||(32439-32620)
[»] scaffold0700 (1 HSPs)
scaffold0700 (42-150)||(4402-4510)


Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 313
Target Start/End: Complemental strand, 44225488 - 44225195
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44225488 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 44225389  T
Q  120 tgccaccaaaaaataggacgaacaccgaccggcctataagtgtcctaacctttaataacctatctaagaggtctagtgaaattcctaaattgtcgtcttc 219  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44225388 taccaccaaaaaataggacgaacaccgaccgacctataagtgtcctaacctataataacctatctaagaggtctaatgaaattcctaaattgtcgtcttc 44225289  T
Q  220 ttccatgtcttccgtccattcaagatcttgttccnnnnnnngcggagtgggagtatcatcacaaacaattggattgtgctcatttgttggtttc 313  Q
    |||||||||||||||||||||||||| |||||||       |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44225288 ttccatgtcttccgtccattcaagattttgttcctttttttgcggagggggagtatcatcacaaacaattggattgtgctcatttgttggtttc 44225195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 38 - 150
Target Start/End: Original strand, 2368797 - 2368909
Alignment:
Q  38 taatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaatgccaccaaaaaatagga 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2368797 taatatatataatattagttacatattggccacaaatatccaaattacatgaccggccaccaaaaaatacgtcggggtgtaataccaccaaaaaatagga 2368896  T
Q  138 cgaacaccgaccg 150  Q
    |||||||||||||    
T  2368897 cgaacaccgaccg 2368909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 4726 - 4577
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    |||||||||||||| ||||| | ||| ||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||| ||||||||||||    
T  4726 aaaataattcattttatttatt-tatttaatattagttacatattggccataaatatcaaaattacacaaccggccaccaaaaaatatgtcggggtgtaa 4628  T
Q  120 tgccaccaaaaaataggacgaacaccgaccggcctataagtgtcctaacct 170  Q
    | ||||||||||||| |||||||||||||||  ||| ||||||| ||||||    
T  4627 taccaccaaaaaatatgacgaacaccgaccgatctaaaagtgtcataacct 4577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 38048166 - 38048315
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    ||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||| |||||||| || |||||||||||||||| ||||||||||||    
T  38048166 aaaataattcatttcatatatt-tatataatattagttacatattggccataaatatcaaaattacacaatcggccaccaaaaaatatgtcggggtgtaa 38048264  T
Q  120 tgccaccaaaaaataggacgaacaccgaccggcctataagtgtcctaacct 170  Q
    | ||||||||||||| ||||||||||||||| || | ||||||| ||||||    
T  38048265 taccaccaaaaaatatgacgaacaccgaccgacccaaaagtgtcataacct 38048315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 38386707 - 38386836
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    ||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||| ||||||||||||    
T  38386707 aaaataattcatttcatatatt-tatataatattagttacatattggccataaatatcaaaattacacaaccggccaccaaaaaatatgtcggggtgtaa 38386805  T
Q  120 tgccaccaaaaaataggacgaacaccgaccg 150  Q
    | ||||||||||||| |||||||||||||||    
T  38386806 taccaccaaaaaatatgacgaacaccgaccg 38386836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 19363734 - 19363612
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    ||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||| |||||||| ||||||||||||||||||| ||||||||||||    
T  19363734 aaaataattcatttcatata-tatatataatattagttacatattagccataaatatcaaaattacacaaccggccaccaaaaaatatgtcggggtgtaa 19363636  T
Q  120 tgccaccaaaaaataggacgaaca 143  Q
    | |||| |||| ||| ||||||||    
T  19363635 taccactaaaatatatgacgaaca 19363612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 311 - 378
Target Start/End: Complemental strand, 44225165 - 44225098
Alignment:
Q  311 ttcattgtaagcgttttgtctatccaaaaatgcaaaatgtcaattctccacctcaccaatcttgttgt 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  44225165 ttcattgtaagcgttttgtctatccaaaaatgcaaaatgtcaattctccgccacaccaatcttgttgt 44225098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 24503527 - 24503458
Alignment:
Q  43 tatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcgg 112  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  24503527 tatacaatattagttaaatattggccacaaatatccaaattacatatccggccaccaaaaaacacgtcgg 24503458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 262 - 313
Target Start/End: Complemental strand, 24503322 - 24503271
Alignment:
Q  262 cggagtgggagtatcatcacaaacaattggattgtgctcatttgttggtttc 313  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24503322 cggagtgggagtatcatcacaaataattggattgtgctcatttgttggtttc 24503271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 145
Target Start/End: Complemental strand, 12869065 - 12868962
Alignment:
Q  40 atatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaatgccaccaaaaaataggacg 139  Q
    ||||||||||| ||||||||||||||||||||| ||||    ||||||||||||||||||||||||| |||  |||| |||  |  ||||||||||||||    
T  12869065 atatatataatgttagttacatattggccacaagtatcagcgttacataaccggccaccaaaaaatatgtc--ggtgcaatatcgacaaaaaataggacg 12868968  T
Q  140 aacacc 145  Q
    ||||||    
T  12868967 aacacc 12868962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 145
Target Start/End: Complemental strand, 26151958 - 26151853
Alignment:
Q  38 taatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaatgccaccaaaaaatagga 137  Q
    ||||||||||||| || ||||||||||| |||||||||||    ||| |||||| |||||||||||||| |||  ||||||||  || ||||||||||||    
T  26151958 taatatatataatgttcgttacatattgaccacaaatatcggtgttatataaccagccaccaaaaaatatgtc--ggtgtaatatcaacaaaaaatagga 26151861  T
Q  138 cgaacacc 145  Q
    | ||||||    
T  26151860 caaacacc 26151853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 313
Target Start/End: Complemental strand, 1030745 - 1030452
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1030745 aaaataattcatctcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaataagtcggggtgtaa 1030646  T
Q  120 tgccaccaaaaaataggacgaacaccgaccggcctataagtgtcctaacctttaataacctatctaagaggtctagtgaaattcctaaattgtcgtcttc 219  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1030645 taccaccaaaaaataggacgaacaccgaccgacctataagtgtcctaacctataataacctatctaagaggtctagtgaaagtcctaaattgtcgtcttc 1030546  T
Q  220 ttccatgtcttccgtccattcaagatcttgttccnnnnnnngcggagtgggagtatcatcacaaacaattggattgtgctcatttgttggtttc 313  Q
    ||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1030545 ttccatgtcgtccgtccattcaagatcttgttcctttttttgcggagtgggagtatcatcacaaacaattggattgtgctcatttgttggtttc 1030452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 12704350 - 12704479
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    ||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||| ||||||||||||    
T  12704350 aaaataattcatttcatatatt-tatataatattagttacatattggccataaatatcaaaattacacaaccggccaccaaaaaatatgtcggggtgtaa 12704448  T
Q  120 tgccaccaaaaaataggacgaacaccgaccg 150  Q
    | ||||||||||||||||||||||| |||||    
T  12704449 taccaccaaaaaataggacgaacactgaccg 12704479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 4319617 - 4319759
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    ||||||||||||||||| || | ||||||||| ||||||||||||||||| ||||||| |||||||| ||||||||||||||||||| ||| ||||||||    
T  4319617 aaaataattcatttcatatatt-tatataataatagttacatattggccataaatatcaaaattacacaaccggccaccaaaaaatatgtcagggtgtaa 4319715  T
Q  120 tgccaccaaaaaataggacgaacaccgaccggcctataagtgtc 163  Q
    | |||||||||||| |||||||||||||||| || | |||||||    
T  4319716 taccaccaaaaaattggacgaacaccgaccgacccaaaagtgtc 4319759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 31484170 - 31484300
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    ||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||| |||||||||  |||||||||||    
T  31484170 aaaataattcatttcatatatt-tatataatattagttacatattggccataaatatcaaaattacacaaccggccatcaaaaaatatttcggggtgtaa 31484268  T
Q  120 tgccacc-aaaaaataggacgaacaccgaccg 150  Q
    | ||||| ||||||||||||||||||||||||    
T  31484269 taccaccaaaaaaataggacgaacaccgaccg 31484300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 32274992 - 32275142
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccacc-aaaaaatacgtcggggtgta 118  Q
    ||||||||||||||||| || | ||||||||||||| ||||||||||||| ||||||| |||||||| |||| |||||| |||||||| |||||||||||    
T  32274992 aaaataattcatttcatatatt-tatataatattaggtacatattggccataaatatcaaaattacacaaccagccaccaaaaaaatatgtcggggtgta 32275090  T
Q  119 atgccaccaaaaaataggacgaacaccgaccggcctataagtgtcctaacct 170  Q
    || |||||||||||||  |||||||||||||  || | ||||||| ||||||    
T  32275091 ataccaccaaaaaatataacgaacaccgaccaacccaaaagtgtcataacct 32275142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 311 - 378
Target Start/End: Complemental strand, 1030422 - 1030355
Alignment:
Q  311 ttcattgtaagcgttttgtctatccaaaaatgcaaaatgtcaattctccacctcaccaatcttgttgt 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1030422 ttcattgtaagcgttttgtctatccaaaaatgcaaaatgtcaattctccacctcaccaatcttgttgt 1030355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 313
Target Start/End: Original strand, 14439627 - 14439919
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  14439627 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacattggggtgtaa 14439726  T
Q  120 tgccaccaaaaaataggacgaacaccgaccggcctataagtgtcctaacctttaataacctatctaagaggtctagtgaaattcctaaattgtcgtcttc 219  Q
    | ||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14439727 taccaccaaaaaataggac-aacaccgaccgacctataagtgtcctaacctataataacctatctaagaggtctagtgaaattcctaaattgtcgtcttc 14439825  T
Q  220 ttccatgtcttccgtccattcaagatcttgttccnnnnnnngcggagtgggagtatcatcacaaacaattggattgtgctcatttgttggtttc 313  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14439826 ttccatgtcttccgtccattcaagatcttgttcctttttttgcggagtgggagtatcatcacaaacaattggattgtgctcatttgttggtttc 14439919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 20 - 313
Target Start/End: Original strand, 30930404 - 30930697
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30930404 aaaataattcatttcatttaatatatataatattagttacatatttgccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgaaa 30930503  T
Q  120 tgccaccaaaaaataggacgaacaccgaccggcctataagtgtcctaacctttaataacctatctaagaggtctagtgaaattcctaaattgtcgtcttc 219  Q
    | |||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  30930504 taccacaaaaaaataggacgaacaccgaccgacctataagtgtcctaacctataataacctatctaagagatctagtgaaattcctaaattgtcgtcttc 30930603  T
Q  220 ttccatgtcttccgtccattcaagatcttgttccnnnnnnngcggagtgggagtatcatcacaaacaattggattgtgctcatttgttggtttc 313  Q
    |||||||||||||||||||||||  |||| ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30930604 ttccatgtcttccgtccattcaaattcttcttcctttttttgcggagtgggagtatcatcacaaacaattggattgtgctcatttgttggtttc 30930697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 42 - 313
Target Start/End: Complemental strand, 54336246 - 54335978
Alignment:
Q  42 atatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaatgccaccaaaaaataggacgaa 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||| |||||| |||||||||| ||    
T  54336246 atatataatattagttacatattggccacaaatatccaaattacataaccgaccaccagaaaatacgtcgggatgtaataccaccagaaaataggacaaa 54336147  T
Q  142 caccgaccggcctataagtgtcctaacctttaataacctatctaagaggtctagtgaaattcctaaattgtcgtcttcttccatgtcttccgtccattca 241  Q
    ||  ||||| || | ||| ||| ||||||   ||||||||||||||| ||||||||| |||||||||||||  ||||||||||||| |||| |   ||||    
T  54336146 cattgaccgaccaaaaagagtcataacct---ataacctatctaagaagtctagtgacattcctaaattgtgttcttcttccatgtattccatgacttca 54336050  T
Q  242 agatcttgttccnnnnnnngcggagtgggagtatcatcacaaacaattggattgtgctcatttgttggtttc 313  Q
    |  |||||||||        |||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  54336049 aattcttgttcctgtttttacggagtgggagtattatcgcaaacaattggattgtgctcatttgttggtttc 54335978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 42 - 313
Target Start/End: Original strand, 20514679 - 20514957
Alignment:
Q  42 atatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaatgccaccaaaaaataggacgaa 141  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | || ||||||||||  |||||||||||||||||||    
T  20514679 atatataatattagttacatattggccacaaatctccaaattacataaccggccacccaaaaaaatgttggggtgtaatatcaccaaaaaataggacgaa 20514778  T
Q  142 caccgaccggcctataagtgtcctaacctttaataacctatctaagaggtctagtgaaattcctaaattgtcgtcttcttccatgtcttccgtccattca 241  Q
    || |||||| |||| ||||||| ||| ||   ||||||||||||||| ||||| ||| |||||||||||  | |||||||||||||||||| ||  ||||    
T  20514779 catcgaccgacctaaaagtgtcataatct---ataacctatctaagaagtctattgacattcctaaatttccctcttcttccatgtcttccatcacttca 20514875  T
Q  242 agatcttgttc----------cnnnnnnngcggagtgggagtatcatcacaaacaattggattgtgctcatttgttggtttc 313  Q
    |  ||||||||                   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20514876 aattcttgttcttttttttttttctttcttcggagtgggagtatcatcacaaacaattggattgtgctcatttgttggtttc 20514957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 38 - 149
Target Start/End: Complemental strand, 27933834 - 27933725
Alignment:
Q  38 taatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaatgccaccaaaaaatagga 137  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||    
T  27933834 taatatatataatgttagttacatattggccacaaatattcaaattacataaccggccaccaaaaaatacgtc--ggtgtaataccaccaaaaaatagga 27933737  T
Q  138 cgaacaccgacc 149  Q
    ||||||||||||    
T  27933736 cgaacaccgacc 27933725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 39646293 - 39646442
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    ||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||| |||||||| |||| |||||||||||||| ||||||||||||    
T  39646293 aaaataattcatttcatatatt-tatataatattagttacatattggccataaatatcaaaattacacaacctgccaccaaaaaatatgtcggggtgtaa 39646391  T
Q  120 tgccaccaaaaaataggacgaacaccgaccggcctataagtgtcctaacct 170  Q
    | |||| ||||||| |||||||||||||||| || | ||||||| ||||||    
T  39646392 taccacaaaaaaatgggacgaacaccgaccgacccaaaagtgtcataacct 39646442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 35068842 - 35068713
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    ||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||| |||||| | ||||||||||||||||||| ||| ||||||||    
T  35068842 aaaataattcatttcatatatt-tatataatattagttacatattggccataaatatcaaaattatacaaccggccaccaaaaaatatgtcagggtgtaa 35068744  T
Q  120 tgccaccaaaaaataggacgaacaccgaccg 150  Q
    | |||| |||||||| |||||||||||||||    
T  35068743 taccacaaaaaaatatgacgaacaccgaccg 35068713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 34084615 - 34084735
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    |||||| |||||||||| || | ||||||||||||||||| ||||||||| ||||||| |||||||| ||||| ||||||||||||| ||||||||||||    
T  34084615 aaaatagttcatttcatatatt-tatataatattagttacgtattggccataaatatcaaaattacacaaccgaccaccaaaaaatatgtcggggtgtaa 34084713  T
Q  120 tgccaccaaaaaataggacgaa 141  Q
    | ||||||||||||| ||||||    
T  34084714 taccaccaaaaaatatgacgaa 34084735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 19871704 - 19871619
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaata 106  Q
    ||||||||||||||||| || | ||||||||||||||||||||||| ||| ||||||| |||||||| |||||||||| ||||||||    
T  19871704 aaaataattcatttcatatatt-tatataatattagttacatattgaccataaatatcaaaattacacaaccggccacaaaaaaata 19871619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 311 - 375
Target Start/End: Original strand, 30930727 - 30930791
Alignment:
Q  311 ttcattgtaagcgttttgtctatccaaaaatgcaaaatgtcaattctccacctcaccaatcttgt 375  Q
    |||||||||||||||||||||||||||||| |||||||| |||||| || |||||||||||||||    
T  30930727 ttcattgtaagcgttttgtctatccaaaaacgcaaaatgccaattccccgcctcaccaatcttgt 30930791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 30530852 - 30530785
Alignment:
Q  43 tatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtc 110  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||||| | |||||||||||||||||    
T  30530852 tatataatattagttacataatgagcacaaatatccaaattacataactgaccaccaaaaaatacgtc 30530785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 375
Target Start/End: Original strand, 14439949 - 14440013
Alignment:
Q  311 ttcattgtaagcgttttgtctatccaaaaatgcaaaatgtcaattctccacctcaccaatcttgt 375  Q
    |||||||||| |||| ||||||||||| || |||||||| ||||||||| |||||||||||||||    
T  14439949 ttcattgtaaacgttctgtctatccaacaacgcaaaatgccaattctccgcctcaccaatcttgt 14440013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 376
Target Start/End: Original strand, 20514987 - 20515051
Alignment:
Q  311 ttcattgtaagcgttttgtctatccaaaaatgcaaaatgtcaattctccacctcaccaatcttgtt 376  Q
    ||||||| |||| |||| ||||||||||||||| ||||| ||||||||| ||||||||||||||||    
T  20514987 ttcattgaaagcttttt-tctatccaaaaatgcgaaatgccaattctccgcctcaccaatcttgtt 20515051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 313
Target Start/End: Original strand, 50335099 - 50335391
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  50335099 aaaataattcatttcatttaatatatataatattagttacatattagccacaaatatccaaattacataatcggccaccaaaaaatacgtcggggtgtaa 50335198  T
Q  120 tgccaccaaaaaataggacgaacaccgaccggcctataagtgtcctaacctttaataacctatctaagaggtctagtgaaattcctaaattgtcgtcttc 219  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||    
T  50335199 taccaccaaaaaataggacgaacaccgaccgacctataagtgtcctaacttataataacctatctaagaggtctagtgaaattcctaaatcgtcgtcttc 50335298  T
Q  220 ttccatgtcttccgtccattcaagatcttgttccnnnnnnngcggagtgggagtatcatcacaaacaattggattgtgctcatttgttggtttc 313  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  50335299 ttccatgtcttccgtccattcaagatcttgttccttttttcgcggagtgggagtatcatcacaaacaattggattgtgctca-ttgttggtttc 50335391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 50007333 - 50007513
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  50007333 aaaataattcatttcatttaatatatataatattagttacatattggccaaaaatatccaaattacttaaccggccaccaaaaaatatgtcggggtgtaa 50007432  T
Q  120 tgccaccaaaaaataggacgaacaccgaccggcctataagtgtcctaacctttaataacctatctaagaggtctagtgaaa 200  Q
    | ||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||    
T  50007433 taccaccaaaaaataggacgaacaccgaccgacctataagtgtcataacctataataacctatctaagaggtctagtgaaa 50007513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 55527458 - 55527309
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    ||||||||||||||||| || | ||||||||||||||||||| ||||||| ||||||| |||||||| ||||||||||||||||||| ||||||||||||    
T  55527458 aaaataattcatttcatatatt-tatataatattagttacatgttggccataaatatcaaaattacacaaccggccaccaaaaaatatgtcggggtgtaa 55527360  T
Q  120 tgccaccaaaaaataggacgaacaccgaccggcctataagtgtcctaacct 170  Q
    | ||||||||||||||||||||||||||||| || | ||||||| ||||||    
T  55527359 taccaccaaaaaataggacgaacaccgaccgacccaaaagtgtcataacct 55527309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 143 - 248
Target Start/End: Complemental strand, 12657169 - 12657064
Alignment:
Q  143 accgaccggcctataagtgtcctaacctttaataacctatctaagaggtctagtgaaattcctaaattgtcgtcttcttccatgtcttccgtccattcaa 242  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12657169 accgaccaacctataagtgtcctaacctataataacctatctaagaggtctagtgaaattcctaaattgtcgtcttcttccatgtcttccatccattcaa 12657070  T
Q  243 gatctt 248  Q
    ||||||    
T  12657069 gatctt 12657064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 24973691 - 24973542
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    ||||||||||||||||| || | ||||||||||||||||||| ||||||| ||||||| |||||||| ||||||||||||||||||| ||||||||||||    
T  24973691 aaaataattcatttcatatatt-tatataatattagttacattttggccataaatatcaaaattacacaaccggccaccaaaaaatatgtcggggtgtaa 24973593  T
Q  120 tgccaccaaaaaataggacgaacaccgaccggcctataagtgtcctaacct 170  Q
    | |||| |||||||| ||||||||||||||| || | ||||||| ||||||    
T  24973592 taccacaaaaaaatatgacgaacaccgaccgacccaaaagtgtcataacct 24973542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 34234506 - 34234654
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    ||||||||||||||||| || | ||||||||||||||||||||||| ||  ||||||| |||||||| |||| || ||||||||||| |||| || ||||    
T  34234506 aaaataattcatttcatatatt-tatataatattagttacatattgaccgtaaatatcaaaattacacaaccagcaaccaaaaaatatgtcgaggcgtaa 34234604  T
Q  120 tgccaccaaaaaataggacgaacaccgaccggcctataagtgtcctaacct 170  Q
    | ||| |||||||||| |||||||||||||| || | ||||||| ||||||    
T  34234605 tacca-caaaaaatagaacgaacaccgaccgacccaaaagtgtcataacct 34234654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 41784405 - 41784335
Alignment:
Q  43 tatataatattagttacatattggccacaaatatccaaattacataaccggccaccaa-aaaatacgtcgg 112  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||  ||||||||| ||||||||||||    
T  41784405 tatataatattagttacatattgatcacaaatatccaaattacataattggccaccaaaaaaatacgtcgg 41784335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 45245144 - 45245200
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatc 77  Q
    ||||||||||||||||| || | ||||||||||||||||||||||||||| |||||||    
T  45245144 aaaataattcatttcatatatt-tatataatattagttacatattggccataaatatc 45245200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 371
Target Start/End: Original strand, 50335428 - 50335481
Alignment:
Q  318 taagcgttttgtctatccaaaaatgcaaaatgtcaattctccacctcaccaatc 371  Q
    ||||| |||||||||||||||||||||||||| ||||||||| |||||| ||||    
T  50335428 taagcattttgtctatccaaaaatgcaaaatgccaattctccgcctcacgaatc 50335481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 21177874 - 21177806
Alignment:
Q  38 taatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaata 106  Q
    |||| |||||||| ||||||||||||||| ||||||||||    |||||||| ||||||| ||||||||    
T  21177874 taatctatataatgttagttacatattggtcacaaatatcggtgttacataatcggccacgaaaaaata 21177806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 5314681 - 5314613
Alignment:
Q  44 atataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcgg 112  Q
    ||||||| ||||||||||||| |||| |||||||    ||||||||||||| ||||||| ||| |||||    
T  5314681 atataatgttagttacatattagccaaaaatatcggcgttacataaccggctaccaaaatatatgtcgg 5314613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 378
Target Start/End: Complemental strand, 41784117 - 41784065
Alignment:
Q  326 ttgtctatccaaaaatgcaaaatgtcaattctccacctcaccaatcttgttgt 378  Q
    ||||||||||  ||| ||||||||| | ||||||| |||||||||||||||||    
T  41784117 ttgtctatccgtaaaagcaaaatgtaatttctccatctcaccaatcttgttgt 41784065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 313
Target Start/End: Complemental strand, 12067081 - 12066798
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12067081 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 12066982  T
Q  120 tgccaccaaaaaataggacgaacaccgaccggcctataagtgtcctaacctttaataacctatctaagaggtctagtgaaattcctaaattgtcgtcttc 219  Q
    | |||||||||||||||||||||||| |||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||    
T  12066981 taccaccaaaaaataggacgaacaccaaccgacctataaatgtcctaacctataataacctatctaagaggtctagtgaaattcctaa--tgtcgtcttc 12066884  T
Q  220 ttccatgtcttccgtccattcaagatcttgttccnnnnnnngcggagtgggagtatcatcacaaacaattggattgtgctcatttgttggtttc 313  Q
    |||||||||||| |||||||||||||||||||         |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12066883 ttccatgtcttcagtccattcaagatcttgtt--------tgcggagtgggagtatcgtcacaaacaattggattgtgctcatttgttggtttc 12066798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 40 - 150
Target Start/End: Original strand, 30704116 - 30704226
Alignment:
Q  40 atatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaatgccaccaaaaaataggacg 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||| ||||||||    
T  30704116 atatatataatattagttacatattggccacaaatatccaaattacataaccggccatcaaaaaatatgtcggggtgtaataccaccaaaatataggacg 30704215  T
Q  140 aacaccgaccg 150  Q
    |||||||||||    
T  30704216 aacaccgaccg 30704226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 33401920 - 33402069
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    ||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||| ||||||||||||    
T  33401920 aaaataattcatttcatatatt-tatataatattagttacatattggccataaatatcaaaattacacaaccggccaccaaaaaatatgtcggggtgtaa 33402018  T
Q  120 tgccaccaaaaaataggacgaacaccgaccggcctataagtgtcctaacct 170  Q
    | |||| ||||||   ||||||||||||||| || | ||||||| ||||||    
T  33402019 taccacaaaaaaaattgacgaacaccgaccgacccaaaagtgtcataacct 33402069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 28475276 - 28475425
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    ||||||||||||||||| || | |||||||||||||||||||||||||   ||||||| |||||||| ||||| ||||||||||||| |  |||||||||    
T  28475276 aaaataattcatttcatatatt-tatataatattagttacatattggctgtaaatatcaaaattacacaaccgaccaccaaaaaatatgatggggtgtaa 28475374  T
Q  120 tgccaccaaaaaataggacgaacaccgaccggcctataagtgtcctaacct 170  Q
    | ||||||||||||||||||||||||||||| || | ||||||| ||||||    
T  28475375 taccaccaaaaaataggacgaacaccgaccgacccaaaagtgtcataacct 28475425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 48026675 - 48026547
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    ||||||||||||| ||| || | ||||||||||||||||||||||| ||| ||||||| |||||||| ||||||||| ||||||||| ||||||||||||    
T  48026675 aaaataattcattacatatatt-tatataatattagttacatattgaccataaatatcaaaattacacaaccggccatcaaaaaatatgtcggggtgtaa 48026577  T
Q  120 tgccaccaaaaaataggacgaacaccgacc 149  Q
    | ||||||||||||| ||||||||||||||    
T  48026576 taccaccaaaaaatatgacgaacaccgacc 48026547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 33618346 - 33618496
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    ||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||| ||||||||||||    
T  33618346 aaaataattcatttcatatatt-tatataatattagttacatattggccataaatatcaaaattacacaaccggccaccaaaaaatatgtcggggtgtaa 33618444  T
Q  120 tgccaccaaaaaata-ggacgaacaccgaccggcctataagtgtcctaacct 170  Q
    | |||| |||||| |  ||||||||| ||||| || | ||||||| ||||||    
T  33618445 taccacaaaaaaaaattgacgaacactgaccgacccaaaagtgtcataacct 33618496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 23942698 - 23942629
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataa 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23942698 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatacaaattacataa 23942629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 7318857 - 7318980
Alignment:
Q  45 tataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaatgccaccaaaaaataggacgaacac 144  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||| |||  | |||||| | || |||||||| |||||||||    
T  7318857 tataatattagtcacatattggccacaaatatccaaattacataaccggacacaaaaaaatatgtc--gatgtaatactacaaaaaaatatgacgaacac 7318954  T
Q  145 cgaccggcctataagtgtcctaacct 170  Q
    |||||| || | ||||||| ||||||    
T  7318955 cgaccgaccaaaaagtgtcataacct 7318980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 43 - 131
Target Start/End: Original strand, 35564020 - 35564108
Alignment:
Q  43 tatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaatgccaccaaaaa 131  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| ||  |||| |||||||||| ||||||||||||| ||||||||||    
T  35564020 tatataatattagttacatattggccataaatatcaaaattacacaaatggcctccaaaaaatatgtcggggtgtaataccaccaaaaa 35564108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 311 - 375
Target Start/End: Complemental strand, 12066768 - 12066704
Alignment:
Q  311 ttcattgtaagcgttttgtctatccaaaaatgcaaaatgtcaattctccacctcaccaatcttgt 375  Q
    |||||||||| ||||||||||||||||||| |||||||| ||||||||| |||||||||||||||    
T  12066768 ttcattgtaaccgttttgtctatccaaaaacgcaaaatgccaattctccgcctcaccaatcttgt 12066704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 326 - 378
Target Start/End: Original strand, 7319146 - 7319198
Alignment:
Q  326 ttgtctatccaaaaatgcaaaatgtcaattctccacctcaccaatcttgttgt 378  Q
    ||||||||||| ||| ||||||||||| |||||| ||||||||||||||||||    
T  7319146 ttgtctatccataaaagcaaaatgtcatttctccgcctcaccaatcttgttgt 7319198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 313
Target Start/End: Original strand, 5016468 - 5016761
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5016468 aaaataatttatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcgaggtgtaa 5016567  T
Q  120 tgccaccaaaaaataggacgaacaccgaccggcctataagtgtcctaacctttaataacctatctaagaggtctagtgaaattcctaaattgtcgtcttc 219  Q
    | |||| |||||||| ||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||| | ||||||||||| ||||||||    
T  5016568 taccacaaaaaaataagacgaacaccgaccgacctataagtgtcctaacctacaataacctatctaagaggtctagtaacattcctaaattttcgtcttc 5016667  T
Q  220 ttccatgtcttccgtccattcaagatcttgttccnnnnnnngcggagtgggagtatcatcacaaacaattggattgtgctcatttgttggtttc 313  Q
    |||||||||||||||||||||||  |||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5016668 ttccatgtcttccgtccattcaaattcttgttcctttttttgcggagtgggagtatcatcacaaacaattggattgtgctcatttgttggtttc 5016761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 71 - 312
Target Start/End: Complemental strand, 32075958 - 32075719
Alignment:
Q  71 aaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaatgccaccaaaaaataggacgaacaccgaccggcctataagtgtcctaacct 170  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||| |||| |||||||| ||||||||||||||| || | ||||||| || |||    
T  32075958 aaatatccaaattacataaccggtcacccaaaaatacgtcggggtgtaataccactaaaaaataagacgaacaccgaccgaccaaaaagtgtcatagcct 32075859  T
Q  171 ttaataacctatctaagaggtctagtgaaattcctaaattgtcgtcttcttccatgtcttccgtccattcaagatcttgttccnnnnnnngcggagtggg 270  Q
       ||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||| |   |||||  ||||||| |        |||||||||    
T  32075858 ---ataacctatctaagaagtctagtgacattcctaaattttcgtcttcttccatgtcttccatgacttcaaattcttgtttcttttttc-cggagtggg 32075763  T
Q  271 agtatcatcacaaacaattgga--ttgtgctcatttgttggttt 312  Q
    ||||| | |||||| |||||||  ||||||||||||||||||||    
T  32075762 agtataaccacaaataattggattttgtgctcatttgttggttt 32075719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 34279138 - 34279012
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    ||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||  |||||||| ||||| ||||||||||||| ||||||||||||    
T  34279138 aaaataattcatttcatatatt-tatataatattagttacatattggccataaatataaaaattacacaaccgaccaccaaaaaatatgtcggggtgtaa 34279040  T
Q  120 tgccaccaaaaaataggacgaacaccga 147  Q
    | ||||||||||||| ||||||||||||    
T  34279039 taccaccaaaaaataagacgaacaccga 34279012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 24 - 170
Target Start/End: Complemental strand, 5966825 - 5966680
Alignment:
Q  24 taattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaatgcc 123  Q
    ||||||||||||| || | |||||||||||||||||||||||| || ||||||| |||||||| |||||| |||||||||||| |||| |||||||| ||    
T  5966825 taattcatttcatatatt-tatataatattagttacatattggtcataaatatcaaaattacacaaccggtcaccaaaaaatatgtcgaggtgtaatacc 5966727  T
Q  124 accaaaaaataggacgaacaccgaccggcctataagtgtcctaacct 170  Q
    || |||||||||||||||||||||||| || | ||||||| ||||||    
T  5966726 acaaaaaaataggacgaacaccgaccgacccaaaagtgtcataacct 5966680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 43 - 149
Target Start/End: Complemental strand, 30944425 - 30944319
Alignment:
Q  43 tatataatattagttacatattggccacaaatatccaaattacataaccggccaccaa-aaaatacgtcggggtgtaatgccaccaaaaaataggacgaa 141  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||  |||  |  ||||||||||||| ||    
T  30944425 tatataatattagttagatattggccacaaatatccaaattacataactggccaccaaaaaaatacgtcggtgt-aaatatcgacaaaaaataggacaaa 30944327  T
Q  142 caccgacc 149  Q
    ||||||||    
T  30944326 caccgacc 30944319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 15893503 - 15893564
Alignment:
Q  43 tatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaa 104  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15893503 tatataatattaattacatattggccacaaatatccaaattacataaccgaccaccaaaaaa 15893564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 311 - 376
Target Start/End: Complemental strand, 32075688 - 32075623
Alignment:
Q  311 ttcattgtaagcgttttgtctatccaaaaatgcaaaatgtcaattctccacctcaccaatcttgtt 376  Q
    ||||||| | |||||||||||||||||||| ||||||||  |||||||| ||||||||||||||||    
T  32075688 ttcattgaatgcgttttgtctatccaaaaacgcaaaatgctaattctccccctcaccaatcttgtt 32075623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 29670864 - 29670796
Alignment:
Q  38 taatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaata 106  Q
    |||| |||||||| |||||||||||||||||||||||||| |  ||||| ||||  ||| |||||||||    
T  29670864 taatctatataattttagttacatattggccacaaatatcgacgttacacaaccatccagcaaaaaata 29670796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 43 - 313
Target Start/End: Original strand, 20884320 - 20884591
Alignment:
Q  43 tatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaatgccaccaaaaaataggacgaac 142  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  20884320 tatataatattagttacatattggccacaaatatcaaaattacataaccggccaccaaaaaatacgtcgggatgtaataccaccaaaaaataggacgaac 20884419  T
Q  143 accgaccggcctataagtgtcctaacctttaataacctatctaagaggtctagtgaaattcctaaattgtcgtcttcttccatgtcttccgtccattcaa 242  Q
    |||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  20884420 accgaccgacctataagtgtcctaacctataatatcctatctaagaggtctagtgaaattcctaaattgtcgtcttcttccatgtcttccgttcattcaa 20884519  T
Q  243 gatcttgttccnnnnnnngcggagtgggagtatcatcacaaacaa-ttggattgtgctcatttgttggtttc 313  Q
    |||||||||||       ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20884520 gatcttgttcctttttttgcggagtgggagtatcatcacaaacaatttggattgtgctcatttgttggtttc 20884591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 17343941 - 17343830
Alignment:
Q  38 taatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaatgccaccaaaaaatagga 137  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  17343941 taatatatataatattagttatatattggccataaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaatacca-caaaaaatagga 17343843  T
Q  138 cgaacaccgaccg 150  Q
    |||||||||||||    
T  17343842 cgaacaccgaccg 17343830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 28704410 - 28704558
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    ||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||| | ||||||||||||    
T  28704410 aaaataattcatttcatatatt-tatataatattagttacatattggccataaatatcaaaattacacaaccggccaccaaaaaa-atgtcggggtgtaa 28704507  T
Q  120 tgccaccaaaaaataggacgaacaccgaccggcctataagtgtcctaacct 170  Q
    | ||||||||||||||||||||||||||||| || | ||||||| ||||||    
T  28704508 taccaccaaaaaataggacgaacaccgaccgacccaaaagtgtcataacct 28704558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 759683 - 759832
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    ||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||| |||||||| ||||| ||||||||||||| || |||||||||    
T  759683 aaaataattcatttcatatatt-tatataatattagttacatattggccataaatatcaaaattacacaaccgaccaccaaaaaatatgttggggtgtaa 759781  T
Q  120 tgccaccaaaaaataggacgaacaccgaccggcctataagtgtcctaacct 170  Q
    | ||||||||||||||||||||||||||| | || | ||||||| ||||||    
T  759782 taccaccaaaaaataggacgaacaccgactgacccaaaagtgtcataacct 759832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 26506610 - 26506713
Alignment:
Q  43 tatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaatgccaccaaaaaataggacgaac 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||| |||||||||||||||||||||    
T  26506610 tatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtc--ggtataataccaccaaaaaataggacgaac 26506707  T
Q  143 accgac 148  Q
    ||||||    
T  26506708 accgac 26506713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 140 - 248
Target Start/End: Original strand, 29195335 - 29195443
Alignment:
Q  140 aacaccgaccggcctataagtgtcctaacctttaataacctatctaagaggtctagtgaaattcctaaattgtcgtcttcttccatgtcttccgtccatt 239  Q
    ||||| ||||| ||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29195335 aacactgaccgacctataagtgtcctaacccataataacatatctaagaggtctagtgaaattcctaaattgtcgtcttcttccatgtcttctgtccatt 29195434  T
Q  240 caagatctt 248  Q
    |||||||||    
T  29195435 caagatctt 29195443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 28678414 - 28678564
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtc-ggggtgta 118  Q
    ||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||  ||| ||||||||    
T  28678414 aaaataattcatttcatatatt-tatataatattagttacatattggccataaatatcaaaattacacaactggccaccaaaaaatttgtcgggggtgta 28678512  T
Q  119 atgccaccaaaaaataggacgaacaccgaccggcctataagtgtcctaacct 170  Q
    || ||||||||||||||||||||||||||||| || | ||||||| ||||||    
T  28678513 ataccaccaaaaaataggacgaacaccgaccgacccaaaagtgtcataacct 28678564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 5506249 - 5506119
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaa-aaaatacgtcggggtgta 118  Q
    ||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||| |||||||| | ||||||||||| |||||| |||||||| ||    
T  5506249 aaaataattcatttcatatatt-tatataatattagttacatattggccataaatatcaaaattacacagccggccaccaaaaaaatatgtcggggtcta 5506151  T
Q  119 atgccaccaaaaaataggacgaacaccgaccg 150  Q
    || ||||||||||||| |||||||||||||||    
T  5506150 ataccaccaaaaaatatgacgaacaccgaccg 5506119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 30490243 - 30490391
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccacc-aaaaaatacgtcggggtgta 118  Q
    |||| |||||||||||| || | ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||||||  ||||||||||    
T  30490243 aaaacaattcatttcatatatt-tatataatattagttacatattggccataaatatcaaaattacacaaccggccaccaaaaaaatatttcggggtgta 30490341  T
Q  119 atgccaccaaaaaataggacgaacaccgaccggcctataagtgtcctaac 168  Q
    || ||| ||||||| | ||||||||||||||| || | ||||||| ||||    
T  30490342 ataccaacaaaaaaaatgacgaacaccgaccgacccagaagtgtcataac 30490391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 311 - 378
Target Start/End: Original strand, 20884621 - 20884688
Alignment:
Q  311 ttcattgtaagcgttttgtctatccaaaaatgcaaaatgtcaattctccacctcaccaatcttgttgt 378  Q
    |||||| ||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||    
T  20884621 ttcattataagcgttttgtctatctaaaaatgcaaaatgccaattctccatctcaccaatcttgttgt 20884688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 6374351 - 6374287
Alignment:
Q  42 atatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaata 106  Q
    ||||||||||||||||||||||| ||||||||||||   ||||||||||| ||||| ||||||||    
T  6374351 atatataatattagttacatattagccacaaatatcggcattacataacctgccacaaaaaaata 6374287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 312 - 378
Target Start/End: Original strand, 26506887 - 26506953
Alignment:
Q  312 tcattgtaagcgttttgtctatccaaaaatgcaaaatgtcaattctccacctcaccaatcttgttgt 378  Q
    |||||| | |||| ||||||||||| ||| ||||||||||| |||||| ||||||||||||||||||    
T  26506887 tcattgaaggcgtcttgtctatccataaaagcaaaatgtcatttctccgcctcaccaatcttgttgt 26506953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 34016484 - 34016563
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaa 100  Q
    ||||||| ||||||||| || | ||||||||||||||||||||||| | | ||||||| |||||||| |||| ||||||||    
T  34016484 aaaataaatcatttcatatatt-tatataatattagttacatattgacaataaatatcaaaattacacaaccagccaccaa 34016563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 14216909 - 14216973
Alignment:
Q  40 atatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaa 104  Q
    ||||||||||| ||||||| |||||||||| |||||||    ||||||||| |||||||||||||    
T  14216909 atatatataatgttagttatatattggccataaatatcggcgttacataactggccaccaaaaaa 14216973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 51
Target Start/End: Original strand, 20884001 - 20884032
Alignment:
Q  20 aaaataattcatttcatttaatatatataata 51  Q
    ||||||||||||||||||||||||||||||||    
T  20884001 aaaataattcatttcatttaatatatataata 20884032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 375
Target Start/End: Complemental strand, 17343644 - 17343595
Alignment:
Q  326 ttgtctatccaaaaatgcaaaatgtcaattctccacctcaccaatcttgt 375  Q
    ||||||||||| |||  |||||||||| |||||| |||||||||||||||    
T  17343644 ttgtctatccataaactcaaaatgtcatttctccgcctcaccaatcttgt 17343595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 172; Significance: 3e-92; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 20 - 313
Target Start/End: Original strand, 9827701 - 9828004
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9827701 aaaataactcattttatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 9827800  T
Q  120 tgccaccaaaaaataggacgaacaccgaccggcctataagtgtcctaacctttaataacctatctaagaggtctagtgaaattcctaaattgtcgtcttc 219  Q
    | |||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||| |||| |||||| ||||||||    
T  9827801 taccacaaaaaaataagacgaacaccgaccgacctataagtgtcctaacctttaataacctaactaagaggtctaatgacattcttaaattttcgtcttc 9827900  T
Q  220 ttccatgtcttccgtccattcaagatcttgttc----------cnnnnnnngcggagtgggagtatcatcacaaacaattggattgtgctcatttgttgg 309  Q
    ||||||||||||| ||  || ||  ||||||||                  ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9827901 ttccatgtcttccatcacttgaaattcttgttcttttttttttttttttttgcggagtgggagtattatcacaaacaattggattgtgctcatttgttgg 9828000  T
Q  310 tttc 313  Q
    ||||    
T  9828001 tttc 9828004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 41 - 309
Target Start/End: Original strand, 22728876 - 22729147
Alignment:
Q  41 tatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaatgccaccaaaaaataggacga 140  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  22728876 tatatataatattagttacatattggccacagatatccaaattaaataactggccacccaaaaatacgtcggggtgtaataccaccaaaaaataggacga 22728975  T
Q  141 acaccgaccggcctataagtgtcctaacctttaataacctatctaagaggtctagtgaaattcctaaattgtcgtcttcttccatgtcttccgtccattc 240  Q
    ||||||| || |||| ||||||| ||||||   ||||||||||||||| ||||| ||| ||||||||||| || |||||||||||||||||| ||| |||    
T  22728976 acaccgatcgacctaaaagtgtcataacct---ataacctatctaagaagtctattgacattcctaaattttcatcttcttccatgtcttccatcccttc 22729072  T
Q  241 aagatcttgttcc------nnnnnnngcggagtgggagtatcatcacaaacaattggattgtgctcatttgttgg 309  Q
    ||  |||||||||              || ||||||||||| |||||||||||||||||||||||||||||||||    
T  22729073 aaattcttgttccttttttttttcttccgaagtgggagtattatcacaaacaattggattgtgctcatttgttgg 22729147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 8273768 - 8273917
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    ||||||||||||||||| || | ||||||||||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||||| ||||||||||||    
T  8273768 aaaataattcatttcatatatt-tatataatattagttacatattgaccataaatatcaaaattacacaaccggccaccaaaaaatatgtcggggtgtaa 8273866  T
Q  120 tgccaccaaaaaataggacgaacaccgaccggcctataagtgtcctaacct 170  Q
    | |||| ||||||||||||||||| |||||| || | ||||||| ||||||    
T  8273867 taccacaaaaaaataggacgaacatcgaccgacccaaaagtgtcataacct 8273917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 35003891 - 35003764
Alignment:
Q  20 aaaataattcatttcatttaatatatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaa 119  Q
    |||||| |||||||||| || | ||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||| |||||||||||    
T  35003891 aaaatatttcatttcatatatt-tatataatattagttacatattgaccacaaatatccaaattacatatccgaccaccaaaaaatacatcggggtgtaa 35003793  T
Q  120 tgccaccaaaaaataggacgaacaccgac 148  Q
    | |||||| ||||||||||||||||||||    
T  35003792 taccaccagaaaataggacgaacaccgac 35003764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 42 - 168
Target Start/End: Original strand, 26225180 - 26225305
Alignment:
Q  42 atatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaatgccaccaaaaaataggacgaa 141  Q
    ||||||||||| ||||||||||||  || |||||||||||||||| || |||||||||||||||| ||||||||||||| |||| |||||||||||||||    
T  26225180 atatataatat-agttacatattgatcataaatatccaaattacacaatcggccaccaaaaaatatgtcggggtgtaataccacaaaaaaataggacgaa 26225278  T
Q  142 caccgaccggcctataagtgtcctaac 168  Q
    ||||||||| || | ||||||| ||||    
T  26225279 caccgaccgacccaaaagtgtcataac 26225305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 14330033 - 14330135
Alignment:
Q  45 tataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaatgccaccaaaaaataggacgaacac 144  Q
    |||||||||||||  ||||||||||||||||| ||||||||||||||| |||||||||||| ||||  ||||||||  |  |||||||||||||||||||    
T  14330033 tataatattagttttatattggccacaaatattcaaattacataaccgaccaccaaaaaatgcgtc--ggtgtaatatcgacaaaaaataggacgaacac 14330130  T
Q  145 cgacc 149  Q
    |||||    
T  14330131 cgacc 14330135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 311 - 378
Target Start/End: Original strand, 9828034 - 9828101
Alignment:
Q  311 ttcattgtaagcgttttgtctatccaaaaatgcaaaatgtcaattctccacctcaccaatcttgttgt 378  Q
    |||||||||||||| ||||||||| ||||| |||||||| ||||||||| ||||||||||||||||||    
T  9828034 ttcattgtaagcgtcttgtctatctaaaaacgcaaaatgccaattctccgcctcaccaatcttgttgt 9828101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 378
Target Start/End: Original strand, 14330318 - 14330370
Alignment:
Q  326 ttgtctatccaaaaatgcaaaatgtcaattctccacctcaccaatcttgttgt 378  Q
    ||||||||||| ||| ||||||| ||| |||||| ||||||||||||||||||    
T  14330318 ttgtctatccataaaagcaaaatatcatttctccgcctcaccaatcttgttgt 14330370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 42 - 226
Target Start/End: Complemental strand, 32620 - 32439
Alignment:
Q  42 atatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaatgccaccaaaaaataggacgaa 141  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||| || | |||| ||||||||||||||||||||| |||||||||| |||||||||    
T  32620 atatataatattagttacatattgtccacaaatattcaaattacatatccagtcacccaaaaatacgtcggggtgtaataccaccaaaaactaggacgaa 32521  T
Q  142 caccgaccggcctataagtgtcctaacctttaataacctatctaagaggtctagtgaaattcctaaattgtcgtcttcttccatg 226  Q
    ||| |||| ||| | ||||||| ||||||   ||||||||||||||| ||||||||| ||||||||| | || ||||||||||||    
T  32520 cactgacctgccaaaaagtgtcataacct---ataacctatctaagaagtctagtgacattcctaaactttcctcttcttccatg 32439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0700 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0700
Description:

Target: scaffold0700; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 4510 - 4402
Alignment:
Q  42 atatataatattagttacatattggccacaaatatccaaattacataaccggccaccaaaaaatacgtcggggtgtaatgccaccaaaaaataggacgaa 141  Q
    ||||||||||||| ||| |||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  4510 atatataatattaattatatattggccataaatatccaaattacacaatcggccaccaaaaaatacgtcggggtgtaatacaaccaaaaaataggacgaa 4411  T
Q  142 caccgaccg 150  Q
    |||||||||    
T  4410 caccgaccg 4402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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