View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13314_low_25 (Length: 379)
Name: NF13314_low_25
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 23 - 369
Target Start/End: Original strand, 6445414 - 6445757
Alignment:
| Q |
23 |
aaatgtgatatagatttgagagatgatatgcattcaatcatggatgtcagcagcagtaggtgagttagtcagaccatgatgatttagttccgttgaattt |
122 |
Q |
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| T |
6445414 |
aaatgtgatatagatttgagagatgatatgcattcaatcatggatgtcagcagcagtaggtgagttagtcagaccatgatgatttagttccgttgaattt |
6445513 |
T |
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| Q |
123 |
ctaaggatctgtgaaccagaaaggtattatttgcaatagataatggcaaatgcaaacatgttcttgggaatcttggcaagtcacaatgttaatcgaactc |
222 |
Q |
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| T |
6445514 |
ctaaggatctgtgacctagaagggtattatttgcaatagataatggcaaatgcaaacatgttcttgggtatcttggcaagtcacaatgttaatcgaactc |
6445613 |
T |
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| Q |
223 |
aatnnnnnnnntaaaataaatcaacaatgatatatgtacctccaataattatctatatctattcaacatttcannnnnnnnatcacattattaatttatt |
322 |
Q |
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| T |
6445614 |
aat---aaaaataaaataaatcaacaatgatatatgtacctccaataattatctatatctattcaacatttcattttctttatcacattattaatttatt |
6445710 |
T |
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| Q |
323 |
acatccatcgcatcactcttttctattctttttctctcctgatgatg |
369 |
Q |
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||||| |||||||||||||||||||| ||||||||||||| |||||| |
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| T |
6445711 |
acatctatcgcatcactcttttctatcctttttctctcctcatgatg |
6445757 |
T |
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