View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13314_low_27 (Length: 372)
Name: NF13314_low_27
Description: NF13314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13314_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 21 - 357
Target Start/End: Complemental strand, 6938870 - 6938537
Alignment:
| Q |
21 |
gacctaacactagagcttacaatgaagacatgnnnnnnnttacaaaatctaataaaaatggtacttctgctgcaacaacaacatgcaaatacattatttg |
120 |
Q |
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| T |
6938870 |
gacctaacactagagcttacaatgaagacatgaaaaaaattacaaaatctaagaaaaatggtacttctgctgcaacaaca---tgcaaatacattatttg |
6938774 |
T |
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| Q |
121 |
gttacctgcaaatggtttaggtaaccaaataattagcatggcttcgtcatttctttatgcgctcctgacagagcgcgttatgcttgtacaatttgggaaa |
220 |
Q |
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| T |
6938773 |
gttacctgcaaatggtttaggtaaccaaataattagcatggcttcatcatttctatatgcgctcctaacgggacgtgttatgctcgtacagtttggaaaa |
6938674 |
T |
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| Q |
221 |
gataaagaaggtttattttgcgaaccatttctaaattcaacttggttgttaccagaaaaatcccctttttggaatgcagaaaatgttcaaacatatcaaa |
320 |
Q |
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| T |
6938673 |
gacaaagaaggtttattttgcgaaccatttctgaattcgacttggttgttaccagaaaaatctcctttttggaatgcagaaaaagttcaaacatatcaaa |
6938574 |
T |
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| Q |
321 |
gcacaattaagatggatgggactaatacattaaatga |
357 |
Q |
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| T |
6938573 |
gcacaattaagatgggtggggctaatacattaaatga |
6938537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 97 - 336
Target Start/End: Original strand, 1036040 - 1036269
Alignment:
| Q |
97 |
aacaacatgcaaatacattatttggttacctgcaaatggtttaggtaaccaaataattagcatggcttcgtcatttctttatgcgctcctgacagagcgc |
196 |
Q |
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| T |
1036040 |
aacaacatgcaaatacattattttgttaccagcaaatgggttaggtaaccaaataattaccgcggcttcatcatttctttacgcgatgctaacggatcgc |
1036139 |
T |
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| Q |
197 |
gttatgcttgtacaatttgggaaagataaagaaggtttattttgcgaaccatttctaaattcaacttggttgttaccagaaaaatcccctttttggaatg |
296 |
Q |
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| T |
1036140 |
gttat----------tttgggaaagacaaagaaggtttattttgtgaaccatttttgaattcaacttggttgttaccaaacgactctcctttttgggatg |
1036229 |
T |
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| Q |
297 |
cagaaaatgttcaaacatatcaaagcacaattaagatgga |
336 |
Q |
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| T |
1036230 |
caaacgatgttaaaacatatcaaagcacaattgagatgga |
1036269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 104 - 321
Target Start/End: Original strand, 1010990 - 1011207
Alignment:
| Q |
104 |
tgcaaatacattatttggttacctgcaaatggtttaggtaaccaaataattagcatggcttcgtcatttctttatgcgctcctgacagagcgcgttatgc |
203 |
Q |
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| T |
1010990 |
tgcaaataccttatttggacaccagctaatggtttaggaaaccaaatggttagcatggctgcaacatttatgtatgctctcctcacaaaccgtgttatgc |
1011089 |
T |
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| Q |
204 |
ttgtacaatttgggaaagataaagaaggtttattttgcgaaccatttctaaattcaacttggttgttaccagaaaaatcccctttttggaatgcagaaaa |
303 |
Q |
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| T |
1011090 |
tcgtaagattcaggaaagacaaacaaggtatattttgtgagccttttttgaattcaacttggttgttaccagaaaagtctcctttttggaatgaaaatca |
1011189 |
T |
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| Q |
304 |
tgttcaaacatatcaaag |
321 |
Q |
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| T |
1011190 |
tgttgaaacatatcaaag |
1011207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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